View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0584_low_35 (Length: 251)
Name: NF0584_low_35
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584_low_35 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 31524009 - 31523771
Alignment:
| Q |
13 |
aatatatgtacctacatacaaaatgtatttgaattttgattagatttgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcag |
112 |
Q |
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| T |
31524009 |
aatatatgtacctacatacaaaatgtatttgaattttgattagatttgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcag |
31523910 |
T |
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| Q |
113 |
gctaccaagtctcttggactcttctggttagtctttggcaacaatctgttgcatgcatgcaacgttactctttcaacgttaaggaaaatatataatcatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31523909 |
gctaccaagtctcttggactcttctggttagtctttggcaacaatctgttgcatgcatgcaacgttactctttcaacgttaaggaaaatatataatcatc |
31523810 |
T |
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| Q |
213 |
tatgaagcacaaacacagacaccggacacgacactggca |
251 |
Q |
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| T |
31523809 |
tatgaagcacaaacacagacaccggacacgacactggca |
31523771 |
T |
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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 15128381 - 15128477
Alignment:
| Q |
70 |
tttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtctttggcaacaatctgttgcat |
166 |
Q |
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| T |
15128381 |
tttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatctttggcaacaatctattgcat |
15128477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 5279655 - 5279577
Alignment:
| Q |
70 |
tttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt |
148 |
Q |
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| T |
5279655 |
tttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaagtcttt |
5279577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 5316437 - 5316519
Alignment:
| Q |
66 |
tatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt |
148 |
Q |
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| T |
5316437 |
tatatttaggctgtaaaaaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaagtcttt |
5316519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 14946681 - 14946588
Alignment:
| Q |
47 |
tttgattagatttgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggt |
140 |
Q |
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| T |
14946681 |
tttgattatatttgatttgtatgtttaggctgtagagaaatgtcagcttaaggaaacaatctgcaagctaccaagtctcttggactcttctggt |
14946588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 5309804 - 5309871
Alignment:
| Q |
81 |
gagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt |
148 |
Q |
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| T |
5309804 |
gagaaatgtcagcttaaggaaacaatcagcaagctatcaagtctcttggactcttctggtaagtcttt |
5309871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 5287391 - 5287309
Alignment:
| Q |
66 |
tatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt |
148 |
Q |
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| T |
5287391 |
tatatttaggctgtagaaaaatgtcagcttaaggaaacaatcagcaagctaccaaatctcttagactcttctggtaagtcttt |
5287309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 19263021 - 19262983
Alignment:
| Q |
210 |
atctatgaagcacaaacacagacaccggacacgacactg |
248 |
Q |
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| T |
19263021 |
atctgtgaagcacgaacacagacaccggacacgacactg |
19262983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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