View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0584_low_39 (Length: 236)
Name: NF0584_low_39
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 4580272 - 4580326
Alignment:
| Q |
31 |
aattccatcttgatgtttgatcattatcaggtttaggggatttgttatattgaag |
85 |
Q |
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| T |
4580272 |
aattccatcttgatgtttgatcattataaggtttaggggatgtgttatattgaag |
4580326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 4580345 - 4580391
Alignment:
| Q |
108 |
aaggaatgttatattgaagtttttgatactgtatttgatattattgg |
154 |
Q |
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| T |
4580345 |
aaggaatgttatattgaagtttttgatactgtatttgatatttttgg |
4580391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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