View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0584_low_5 (Length: 516)
Name: NF0584_low_5
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 91 - 501
Target Start/End: Complemental strand, 4752741 - 4752321
Alignment:
| Q |
91 |
gtgtcgctcatgttcttcccgtttcggatgacggtggtagcaccgccgaaatcgttcgcgtcctcggtattatctacattgcttattattaatcacttaa |
190 |
Q |
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| T |
4752741 |
gtgtcgctcatgttcttcccgtttcggatgacggtggtagcaccgccgaaatcgttcgcgtcctcggtattatctacattgcttattattaatcacttaa |
4752642 |
T |
|
| Q |
191 |
ttaattaattgtgtttctacattgaaaatttggggaattgttatttttactctatactcctgacacctctgatcaaagacgtgttcgacatccaccgaca |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
4752641 |
ttaattaattgtgtttctacattgaaaatttggggaattgttatttttactctatagtactgacacctttgatcaaagacgtgttcgacacccaccgaca |
4752542 |
T |
|
| Q |
291 |
catgtgattaagttgaattaattcatttaattttctcaaattattaccatgttggtgtgtca-----------gtgtccggcgatcata-nnnnnnnnag |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
4752541 |
catgtgattaagttgaattaattcatttaattttctcaaattattaccatgttggtgtgtcagtgttgtgtcagtgtccggcgatcatatttttttttag |
4752442 |
T |
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| Q |
379 |
ggatttggttgattgtggtgtgtgtgcgcgcgcgttataggtggtcctgctgttggagacatacgttctaggtgtttgaggttgtctgatcaaagtacag |
478 |
Q |
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| T |
4752441 |
ggatttggttgattgtg--gtgtgtgcgcgcgcgttataggtggtcctgctgttggagacatacgttctaggtgtttgaggttgtctgatcaaagtacag |
4752344 |
T |
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| Q |
479 |
cggaggatcttgcggttcgaaat |
501 |
Q |
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|||||| |||||||||||||||| |
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| T |
4752343 |
cggaggctcttgcggttcgaaat |
4752321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 5776786 - 5776748
Alignment:
| Q |
283 |
caccgacacatgtgattaagttgaattaattcatttaat |
321 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| |
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| T |
5776786 |
cacccacacatgtgattaagttgaattaatttatttaat |
5776748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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