View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0584_low_9 (Length: 436)
Name: NF0584_low_9
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 29 - 424
Target Start/End: Original strand, 47613378 - 47613773
Alignment:
| Q |
29 |
aaattacacatgcataacaaagatagcataagataaatgacagtgagccattaatactcaatattcgcccacaccttctgcaaaaagatcaaactacact |
128 |
Q |
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| T |
47613378 |
aaattacacatgcataacaaagatagcataagataaatgacagtgagccattactactcaatattcgcccacaccttctgcaaaaagatcaaactacact |
47613477 |
T |
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| Q |
129 |
gatacaccaatgccaaacagtgatataaatatgataaagcttgaatagaatcggcacaactgaatttgagacagagataatgaagtgatactgctcaaaa |
228 |
Q |
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| T |
47613478 |
gatacaccaatgccaaacagtgatataaagatgataaagcttgaatagaatcggcacaactgaatttgagacagagataatgaagtgatactgctcaaaa |
47613577 |
T |
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| Q |
229 |
attaaccacctctgttactatgttaacatatgcccaagccaataactaaacaaaatttagagtttagacgttccatacaaactcaaacatccaacaagct |
328 |
Q |
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| T |
47613578 |
attaaccacctctgttactatgttaacatatgcccaagccaataactaaacaaaatttagagtttagacgttccatacaaactcaaacatccaacaagct |
47613677 |
T |
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| Q |
329 |
gcaactttggattgagccaagggcacctaaactgcaaaaagattaaattgccaaagctaaacagaccactaaactttagtgtgctgccactagtat |
424 |
Q |
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| T |
47613678 |
gcaactttggattgagccaagggcacctaaactgcaaaaagattaaattgccaaagctaaacagaccactaaactttagtgtgctgccactagtat |
47613773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 8015400 - 8015489
Alignment:
| Q |
189 |
tgaatttgagacagagataatgaagtgatactgctcaaaaattaaccacctctgttactatgttaacatatgcccaagccaataactaaac |
279 |
Q |
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| T |
8015400 |
tgaatttgagactgagataatgaaga-atactactgaataataagccacccctattactaagttaacatatgcccaagccaagaaataaac |
8015489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 8015253 - 8015325
Alignment:
| Q |
29 |
aaattacacatgcataacaaagatagcataagataaatgacagtgagccattaatactcaatattcgcccacac |
102 |
Q |
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||||||||||| |||||||||||||||||||| | ||||| |||||||||| ||||||| ||| |||||||| |
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| T |
8015253 |
aaattacacattcataacaaagatagcataagtcatgtgacaatgagccattactactcaa-atttgcccacac |
8015325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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