View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0585_high_10 (Length: 272)
Name: NF0585_high_10
Description: NF0585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0585_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 46213378 - 46213559
Alignment:
| Q |
30 |
agcacagaagaagctaaaaggctagaatctgaagcgggtgttgtagccatattccctgatacaaagtaccaactacacacaacaagaagtccatattttc |
129 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46213378 |
agcacagaagaagctaaaaagctagaatctgaagctggtgttgtagccatattccctgatacaaagtaccaactacacacaacaagaagtccatattttc |
46213477 |
T |
|
| Q |
130 |
ttggtcttgaaccaattcaaaacaccaacagaagctggtcagaaaaactagctaaccatgatgttatagttggagtcctaga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46213478 |
ttggtcttgaaccaattcaaaacaccaacagaagctggtcagaaaaactagctaaccatgatgttatagttggagtcctaga |
46213559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 783 times since January 2019
Visitors: 3837