View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0585_high_2 (Length: 451)
Name: NF0585_high_2
Description: NF0585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0585_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 66 - 422
Target Start/End: Original strand, 38025746 - 38026101
Alignment:
| Q |
66 |
atcagtgttgagaatgggcatattcacaggatcgtttgtttattttttaaaaaggtgaatgagaggacaaagataaagaaaataagaatgaagaaaattt |
165 |
Q |
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| T |
38025746 |
atcagtgctgaaaatgggcatattcacaagatcgtttgtttattttttaaaaaggtgaatgagaggacaaagataaagaaaataagaatgaagaaaattt |
38025845 |
T |
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| Q |
166 |
agatgaaaaccgtgttggtttgacgtataataacttgcttcttgtcgacgagcaaaatcttgttaatattgttgatagtacatttaattggatgatcaat |
265 |
Q |
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| T |
38025846 |
agatgaagaccgtgttggtttgacgtataataacttgcttcttgttgacgagcaaaatcttgttaatattgttgatagtacatttaattggatgatcaat |
38025945 |
T |
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| Q |
266 |
gttgatacttcagcatgccattcttagaaaagatattttctgctcttatacactagataaatttggtgttgttaagttggctcatgaatgtgtgttgact |
365 |
Q |
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| T |
38025946 |
gttgatacttcagcatgccattcttagaaaagatattttctgctcttatacactagataaatttggtgatgtgaagttggctcatgaatgt-tgttgact |
38026044 |
T |
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| Q |
366 |
ttggagaggttaaattgaaattgtctaatggtaccaaattaaattttaaggatgtga |
422 |
Q |
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| T |
38026045 |
ttggagaggctaaattgaaattgtctaatggtaccaaattaaattttaaggatgtga |
38026101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 38032590 - 38032789
Alignment:
| Q |
14 |
aggccaaagcaaaaacaatttctaaaattggtataaagttgttgagtcctacatcagtgttgagaatgggcatat----tcacaggatcgtttgtttatt |
109 |
Q |
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| T |
38032590 |
aggccaaagcaaaagcaatttctaaaattggtataaagt-gttgagtcctacatcagtgttgaaaatgggcatatatattcacaagatcgtttgtttgtt |
38032688 |
T |
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| Q |
110 |
ttttaaaaaggtgaatgagaggacaaagataaagaaaataagaatgaagaaaatttagatgaaaaccgtgttggtttgacgtataataacttgcttcttg |
209 |
Q |
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| T |
38032689 |
ttttaaaaaggggaatgagaggacaaagataaagaaaataagaatgaagaaaatttagatgaagaccgtgttggtgtgacataaaataacttgcttcttg |
38032788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 265 - 422
Target Start/End: Original strand, 38032817 - 38032985
Alignment:
| Q |
265 |
tgttgatacttcag--catgccattcttagaaaagatattttctgctcttatacactagataaatttggtgttgttaagttggctcatg----------a |
352 |
Q |
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| T |
38032817 |
tgttgatacttcagtgcatgtcattcttagaaggggtattttctgctcttatacac-agataaatttggtgatgtgaagttggctcatgaacgttcgtta |
38032915 |
T |
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| Q |
353 |
atgtgtgttgactttggagaggttaaattgaaattgtctaatggtaccaaattaaattttaaggatgtga |
422 |
Q |
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| T |
38032916 |
aagtgtcttgattttagagaggttaatttgaaattgtctaatggtaccaaattaactcttaaggatgtga |
38032985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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