View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0585_high_3 (Length: 382)
Name: NF0585_high_3
Description: NF0585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0585_high_3 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 29 - 372
Target Start/End: Original strand, 226743 - 227086
Alignment:
| Q |
29 |
accgcattctctagctatagctttagcggtgtttatattatcaccggtcaccattctaacagtaattccagcatccaaacaagtcttaacagcttcttta |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226743 |
accgcattctctagctatagctttagcggtgtttatattatcaccggtcaccattctaacagtaattccagcatccaaacaagtcttaacagcttcttta |
226842 |
T |
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| Q |
129 |
actccaggcctcactggatccttgatcccaataatagcaattaaagtatattcatcctctggaatgctgttaccatcttcagaagacgcttcaatatcct |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
226843 |
actccaggcctcactggatccttgatcccaataatagcaattaaagtatattcatcctccggaatgctgttgccatcttcagaagacgcttcaatatcct |
226942 |
T |
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| Q |
229 |
tgaaggctacgcagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgctatttctttgttgttcattcaaatcaacaactttacc |
328 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
226943 |
tgaaggctacacagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgctatttctttgttgttcgttcaaatcaacaactttacc |
227042 |
T |
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| Q |
329 |
ttctgagttaacaactttgtcacacattttcaccactatctctg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
227043 |
ttctgagttaacaactttgtcacacattttcaccactatttctg |
227086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 29 - 372
Target Start/End: Complemental strand, 14590635 - 14590292
Alignment:
| Q |
29 |
accgcattctctagctatagctttagcggtgtttatattatcaccggtcaccattctaacagtaattccagcatccaaacaagtcttaacagcttcttta |
128 |
Q |
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| T |
14590635 |
accgcattctctagctatagctttagcggtgtttatattatcaccggtcaccattctaacagtaattccagcatccaaacaagtcttaacagcttcttta |
14590536 |
T |
|
| Q |
129 |
actccaggcctcactggatccttgatcccaataatagcaattaaagtatattcatcctctggaatgctgttaccatcttcagaagacgcttcaatatcct |
228 |
Q |
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| T |
14590535 |
actccaggcctcactggatccttgatcccaataatagcaattaaagtatattcatcctccggaatgctgttgccatcttcagaagacgcttcaatatcct |
14590436 |
T |
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| Q |
229 |
tgaaggctacgcagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgctatttctttgttgttcattcaaatcaacaactttacc |
328 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14590435 |
tgaaggctacacagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgctatttctttgttgttcgttcaaatcaacaactttacc |
14590336 |
T |
|
| Q |
329 |
ttctgagttaacaactttgtcacacattttcaccactatctctg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14590335 |
ttctgagttaacaactttgtcacacattttcaccactatttctg |
14590292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 367
Target Start/End: Complemental strand, 187951 - 187877
Alignment:
| Q |
293 |
atttctttgttgttcattcaaatcaacaactttaccttctgagttaacaactttgtcacacattttcaccactat |
367 |
Q |
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|||||||||||||||||| ||||| |||||||| |||| || ||||||||||| ||||||||||| |||||||| |
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| T |
187951 |
atttctttgttgttcattaaaatcgacaactttgccttatgcattaacaactttctcacacattttaaccactat |
187877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 37757912 - 37757786
Alignment:
| Q |
33 |
cattctctagctatagctttagcggtgtttatattatcaccggtcaccattctaacagtaattccagcatccaaacaagtcttaacagcttctttaactc |
132 |
Q |
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|||||| |||||||||||||||| || ||||| |||||||| || ||||| | ||| || |||||||| | | |||||| | ||||||||| || || | |
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| T |
37757912 |
cattctttagctatagctttagctgtatttatgttatcaccagtgaccatgcgaacggttattccagctgcaatacaagtttgaacagcttcctttaccc |
37757813 |
T |
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| Q |
133 |
caggcctcactggatccttgatcccaa |
159 |
Q |
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|||| | || ||||||||||| |||| |
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| T |
37757812 |
cagggcgtacaggatccttgattccaa |
37757786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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