View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0585_low_1 (Length: 496)
Name: NF0585_low_1
Description: NF0585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0585_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 2229786 - 2229377
Alignment:
| Q |
1 |
gaattatcaaagctgtaaattggtcagtggctagagcaactccaactgtggctgaagatttattgattgttggaatttatggacctgctgttgttattgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2229786 |
gaattatcaaagctgtaaattggtcagtggctagagcaactccaactgtggctgaagatttattgattgttggaatttatggacctgctgttgttattgg |
2229687 |
T |
|
| Q |
101 |
tcttgaaagaagaactggtgagcttgtttggttgacccatttggataatcatcctgcaggagttattaccatgtctggaacttattataatgggttagta |
200 |
Q |
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| T |
2229686 |
tcttgaaaggagaactggtgagcttatttggttgacccatttggataatcatcctgcaggagttattaccatgtctggaacttattataatgggttagta |
2229587 |
T |
|
| Q |
201 |
taattac-ttctcttgatcttctttctaatattttaaaaatcaaatttagtcaacttgttgaactaagatcggcta------------gtttgatcttga |
287 |
Q |
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| T |
2229586 |
taattccattctcttgatcttctttctaatattttaaaaatcagatttagtcaactggttgaactaagatcggctaatttatcgattggtttgatcttga |
2229487 |
T |
|
| Q |
288 |
ttgtatcgtaatttaattgaaccctagttgaattggttgaaccggctagtttattgattgggttgatcttgattatatcgtaatttaattgaaccgtagt |
387 |
Q |
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| T |
2229486 |
ttgtatcgtaatttaattgaaccctagttgaattggttgaactggctagtttattgattgggttgatcttggttatatcgtaatttaattgaactgtagt |
2229387 |
T |
|
| Q |
388 |
tgaattggat |
397 |
Q |
| |
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|||||||||| |
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| T |
2229386 |
tgaattggat |
2229377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 2238731 - 2238548
Alignment:
| Q |
17 |
aaattggtcagtggctagagcaactccaactgtggctgaagatttattgattgttggaatttatggacctgctgttgttattggtcttgaaagaagaact |
116 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2238731 |
aaattggacattggctagagcaactccaactgtggctgaagatttgttgattgttggaatttatggacctgctgttgttattggtcttgaaaggagaact |
2238632 |
T |
|
| Q |
117 |
ggtgagcttgtttggttgacccatttggataatcatcctgcaggagttattaccatgtctggaacttattataatgggttagta |
200 |
Q |
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| T |
2238631 |
ggtgagcttgtttggttgactcatttggataatcaccctgcaggagttgttaccatgtctggaacttattacaatgggttagta |
2238548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 330 - 462
Target Start/End: Complemental strand, 2229516 - 2229384
Alignment:
| Q |
330 |
cggctagtttattgattgggttgatcttgattatatcgtaatttaattgaaccgtagttgaattggataaaccggctaatttatcgattggtttgatctt |
429 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||||| | ||| ||||| ||||| |||||| |||||||| |
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| T |
2229516 |
cggctaatttatcgattggtttgatcttgattgtatcgtaatttaattgaaccctagttgaattggttgaactggctagtttattgattgggttgatctt |
2229417 |
T |
|
| Q |
430 |
cattatatcgtaatttaattgaactgtagttga |
462 |
Q |
| |
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| T |
2229416 |
ggttatatcgtaatttaattgaactgtagttga |
2229384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 2229424 - 2229374
Alignment:
| Q |
278 |
ttgatcttgattgtatcgtaatttaattgaaccctagttgaattggttgaa |
328 |
Q |
| |
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||||||||| || ||||||||||||||||||| |||||||||||| |||| |
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| T |
2229424 |
ttgatcttggttatatcgtaatttaattgaactgtagttgaattggatgaa |
2229374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 2238437 - 2238385
Alignment:
| Q |
276 |
gtttgatcttgattgtatcgtaatttaattgaaccctagttgaattggttgaa |
328 |
Q |
| |
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||||| |||||||| ||||||||| |||||||||| | |||||||||||||| |
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| T |
2238437 |
gtttgttcttgattatatcgtaatctaattgaaccacaattgaattggttgaa |
2238385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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