View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0585_low_10 (Length: 323)

Name: NF0585_low_10
Description: NF0585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0585_low_10
NF0585_low_10
[»] chr6 (2 HSPs)
chr6 (11-294)||(11390691-11390974)
chr6 (11-294)||(11419650-11419933)
[»] chr3 (16 HSPs)
chr3 (86-254)||(24614659-24614827)
chr3 (82-254)||(24108840-24109012)
chr3 (82-251)||(24116550-24116719)
chr3 (82-254)||(23689756-23689928)
chr3 (82-254)||(24061993-24062165)
chr3 (81-254)||(23693213-23693386)
chr3 (81-254)||(23711653-23711826)
chr3 (81-254)||(23730109-23730282)
chr3 (81-254)||(23748564-23748737)
chr3 (11-74)||(23693128-23693191)
chr3 (11-74)||(23711568-23711631)
chr3 (11-74)||(23730024-23730087)
chr3 (11-74)||(23748479-23748542)
chr3 (11-74)||(23689670-23689733)
chr3 (11-74)||(24061907-24061970)
chr3 (19-74)||(24116742-24116797)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 11390691 - 11390974
Alignment:
Q  11 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggt 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390691 ttatactgcaaaaactggattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggt 11390790  T
Q  111 gtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgcttctgctgtgtattgtgcaagaattgtt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390791 gtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgcttctgctgtgtattgtgcaagaattgtt 11390890  T
Q  211 attggaaggtatcctttatggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390891 attggaaggtatcctttatggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgct 11390974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 11419933 - 11419650
Alignment:
Q  11 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggt 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419933 ttatactgcaaaaactggattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggt 11419834  T
Q  111 gtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgcttctgctgtgtattgtgcaagaattgtt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419833 gtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgcttctgctgtgtattgtgcaagaattgtt 11419734  T
Q  211 attggaaggtatcctttatggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419733 attggaaggtatcctttatggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgct 11419650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 86 - 254
Target Start/End: Original strand, 24614659 - 24614827
Alignment:
Q  86 aagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgcttc 185  Q
    |||||||||| ||||| || |||||||||||||| || ||||||||||||||| || | || |||||||| |||||||| ||||| |||||||||||||     
T  24614659 aagacaagatcatggagaacatggtgtttttcttctctgagctgagcttgacaaatcaatccattgtgtgcgactataagccttcaatgattgctgcttg 24614758  T
Q  186 tgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac 254  Q
    | | ||||||||||||||  ||||| ||||||||||||| || |||| ||||||||||||||| |||||    
T  24614759 ttccgtgtattgtgcaaggtttgttgttggaaggtatcccttttggagcaatgatttgaagatgtgtac 24614827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 82 - 254
Target Start/End: Complemental strand, 24109012 - 24108840
Alignment:
Q  82 gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg 181  Q
    |||||||| ||||| ||||| || ||||||||||||||||| || || ||||||||| || |||| |||||||| |||||||| ||||| ||||||||||    
T  24109012 gatgaagataagatcatggagaagatggtgtttttcttttctgaactcagcttgacaaatcattctattgtgtgcgactataagccttcaatgattgctg 24108913  T
Q  182 cttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac 254  Q
    ||| | | ||||||||||||||  ||||| ||| ||||||||| || |||| ||||||||||||||| |||||    
T  24108912 cttgttccgtgtattgtgcaaggtttgttgttgaaaggtatcccttttggagcaatgatttgaagatgtgtac 24108840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 82 - 251
Target Start/End: Complemental strand, 24116719 - 24116550
Alignment:
Q  82 gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg 181  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||  | ||||||||| || |||| |||||||| ||||| || |||||  |||||||||    
T  24116719 gatgaagacaagatcatggagaatatggtgtttttcttttcggaagtcagcttgacaaatcattctattgtgtgcgactacaagccttcattgattgctg 24116620  T
Q  182 cttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatg 251  Q
    ||| | | ||||||||||||||  ||||| ||| ||||||||| || |||| ||||||||||||||||||    
T  24116619 cttgttccgtgtattgtgcaaggtttgttgttgaaaggtatcccttttggagcaatgatttgaagatatg 24116550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 82 - 254
Target Start/End: Original strand, 23689756 - 23689928
Alignment:
Q  82 gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg 181  Q
    |||||||||||||| ||||| || ||||||||||||||||| || || ||||||||| || |||| ||||| || ||||| || |||||  |||||||||    
T  23689756 gatgaagacaagatcatggagaacatggtgtttttcttttcggaactcagcttgacaaatcattccattgtctgcgactacaagccttcattgattgctg 23689855  T
Q  182 cttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac 254  Q
    ||| | | ||||||||||||||  ||||| ||| ||||||||| || |||| ||||||||||||||| |||||    
T  23689856 cttgttccgtgtattgtgcaaggtttgttgttgaaaggtatcccttttggagcaatgatttgaagatgtgtac 23689928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 82 - 254
Target Start/End: Original strand, 24061993 - 24062165
Alignment:
Q  82 gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg 181  Q
    |||||||||||||| ||||| || ||||||||||||||||| || || ||||||||| || |||| ||||| || ||||| || |||||  |||||||||    
T  24061993 gatgaagacaagatcatggagaacatggtgtttttcttttcggaactcagcttgacaaatcattccattgtctgcgactacaagccttcattgattgctg 24062092  T
Q  182 cttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac 254  Q
    ||| | | ||||||||||||||  ||||| ||| ||||||||| || |||| ||||||||||||||| |||||    
T  24062093 cttgttccgtgtattgtgcaaggtttgttgttgaaaggtatcccttttggagcaatgatttgaagatgtgtac 24062165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 23693213 - 23693386
Alignment:
Q  81 ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct 180  Q
    ||||||||||||||| |||||  | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || |||||||||||||||    
T  23693213 ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct 23693312  T
Q  181 gcttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac 254  Q
    |||| ||| ||||||  ||||||  || || ||||||||||||| || |||| |||||||||||| || |||||    
T  23693313 gcttgtgccgtgtatcttgcaaggtttattgttggaaggtatcccttttggagcaatgatttgaaaatgtgtac 23693386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 23711653 - 23711826
Alignment:
Q  81 ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct 180  Q
    ||||||||||||||| |||||  | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || |||||||||||||||    
T  23711653 ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct 23711752  T
Q  181 gcttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac 254  Q
    |||| ||| ||||||  ||||||  || || ||||||||||||| || |||| |||||||||||| || |||||    
T  23711753 gcttgtgccgtgtatcttgcaaggtttattgttggaaggtatcccttttggagcaatgatttgaaaatgtgtac 23711826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 23730109 - 23730282
Alignment:
Q  81 ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct 180  Q
    ||||||||||||||| |||||  | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || |||||||||||||||    
T  23730109 ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct 23730208  T
Q  181 gcttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac 254  Q
    |||| ||| ||||||  ||||||  || || ||||||||||||| || |||| |||||||||||| || |||||    
T  23730209 gcttgtgccgtgtatcttgcaaggtttattgttggaaggtatcccttttggagcaatgatttgaaaatgtgtac 23730282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 23748564 - 23748737
Alignment:
Q  81 ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct 180  Q
    ||||||||||||||| |||||  | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || |||||||||||||||    
T  23748564 ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct 23748663  T
Q  181 gcttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac 254  Q
    |||| ||| ||||||  ||||||  || || ||||||||||||| || |||| |||||||||||| || |||||    
T  23748664 gcttgtgccgtgtatcttgcaaggtttattgttggaaggtatcccttttggagcaatgatttgaaaatgtgtac 23748737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 23693128 - 23693191
Alignment:
Q  11 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 74  Q
    |||| |||||| |||||| ||||| |||||||||| ||||||||||||| || |||||||||||    
T  23693128 ttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaa 23693191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 23711568 - 23711631
Alignment:
Q  11 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 74  Q
    |||| |||||| |||||| ||||| |||||||||| ||||||||||||| || |||||||||||    
T  23711568 ttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaa 23711631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 23730024 - 23730087
Alignment:
Q  11 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 74  Q
    |||| |||||| |||||| ||||| |||||||||| ||||||||||||| || |||||||||||    
T  23730024 ttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaa 23730087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 23748479 - 23748542
Alignment:
Q  11 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 74  Q
    |||| |||||| |||||| ||||| |||||||||| ||||||||||||| || |||||||||||    
T  23748479 ttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaa 23748542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 23689670 - 23689733
Alignment:
Q  11 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 74  Q
    |||| |||||| |||||| ||||| |||||| ||| ||||||||||||| || |||||||||||    
T  23689670 ttatcctgcaagaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaa 23689733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 24061907 - 24061970
Alignment:
Q  11 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 74  Q
    |||| |||||| |||||| ||||| |||||| ||| ||||||||||||| || |||||||||||    
T  24061907 ttatcctgcaagaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaa 24061970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 24116797 - 24116742
Alignment:
Q  19 caaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 74  Q
    |||||||||| ||||| |||||| ||| ||||||||||||| || |||||||||||    
T  24116797 caaaaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaa 24116742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 130 times since January 2019
Visitors: 3833