View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0585_low_17 (Length: 301)

Name: NF0585_low_17
Description: NF0585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0585_low_17
NF0585_low_17
[»] chr7 (3 HSPs)
chr7 (30-264)||(27272926-27273166)
chr7 (32-71)||(9332985-9333024)
chr7 (215-264)||(27282622-27282671)
[»] chr3 (4 HSPs)
chr3 (113-215)||(6077828-6077932)
chr3 (30-83)||(6077743-6077796)
chr3 (32-71)||(22157926-22157965)
chr3 (118-175)||(9765844-9765900)
[»] chr6 (1 HSPs)
chr6 (32-150)||(13550309-13550421)
[»] chr8 (1 HSPs)
chr8 (31-211)||(43651575-43651750)
[»] chr5 (1 HSPs)
chr5 (31-211)||(21114784-21114959)
[»] chr4 (2 HSPs)
chr4 (33-81)||(7807628-7807676)
chr4 (100-215)||(39482402-39482516)
[»] chr2 (1 HSPs)
chr2 (112-211)||(24863595-24863692)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 27273166 - 27272926
Alignment:
Q  30 acaattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnn------ccaatgaaaatgggagtatggacgttccaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||    
T  27273166 acaattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacaaaaaaaaaaaaaccaatgaaaatgggagtatggacgttccaaa 27273067  T
Q  124 ttacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttatcatctctcaaag 223  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27273066 ttacaattgcaagagacgtttcatccacagataaagacgaaaacatgacagggtttcatcaagtttctatctttcttatcccttttatcatctctcaaag 27272967  T
Q  224 aaataatgaaaatgtttgagaaaatcaaacaaggcacaatt 264  Q
     ||||||||||||| ||||||||||||||||||||||||||    
T  27272966 gaataatgaaaatgcttgagaaaatcaaacaaggcacaatt 27272926  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 9333024 - 9332985
Alignment:
Q  32 aattgctaatgagaattgaggattgagcggctctattgtt 71  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  9333024 aattgctaatgagaattgaggaatgagcggttctattgtt 9332985  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 27282671 - 27282622
Alignment:
Q  215 ctctcaaagaaataatgaaaatgtttgagaaaatcaaacaaggcacaatt 264  Q
    ||||||||| ||||||||||||||| ||||||  ||||||||| ||||||    
T  27282671 ctctcaaaggaataatgaaaatgttagagaaacccaaacaaggtacaatt 27282622  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 6077828 - 6077932
Alignment:
Q  113 gacgttccaaattacaattgcaagag--acgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatccctttta 210  Q
    ||||||||||||||||||||||||||  |||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||    
T  6077828 gacgttccaaattacaattgcaagagagacgtttcatccaaagataaagaggaaagcatgacagggtttcaccaagtttctatatttcttttccctttta 6077927  T
Q  211 tcatc 215  Q
    |||||    
T  6077928 tcatc 6077932  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 6077743 - 6077796
Alignment:
Q  30 acaattgctaatgagaattgaggattgagcggctctattgtttttcttctcagg 83  Q
    |||||||| ||||||||||||||||||| | | |||||||||||||||||||||    
T  6077743 acaattgcaaatgagaattgaggattgaccagttctattgtttttcttctcagg 6077796  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 22157965 - 22157926
Alignment:
Q  32 aattgctaatgagaattgaggattgagcggctctattgtt 71  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  22157965 aattgctaatgagaattgaggaatgagcggttctattgtt 22157926  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 9765844 - 9765900
Alignment:
Q  118 tccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagg 175  Q
    ||||||||||||||||||||||| ||||||||| | ||| ||| |||| |||||||||    
T  9765844 tccaaattacaattgcaagagacatttcatccaaagatagagaggaaa-catgacagg 9765900  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 13550421 - 13550309
Alignment:
Q  32 aattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnnccaatgaaaatgggagtatggacgttccaaattacaatt 131  Q
    ||||||||||||||||||||||||||| || |||||||||||      ||||||       |||||||||||||||| | ||||||||||||||||||||    
T  13550421 aattgctaatgagaattgaggattgaggggttctattgtttt------caggacaaaaaaaccaatgaaaatgggagcagggacgttccaaattacaatt 13550328  T
Q  132 gcaagagacgtttcatcca 150  Q
     ||||||||||||||||||    
T  13550327 acaagagacgtttcatcca 13550309  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 43651750 - 43651575
Alignment:
Q  31 caattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnnccaatgaaaatgggagtatggacgttccaaattacaat 130  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||| ||| |||       | |  ||||||||||| | |||||| ||||||||||||    
T  43651750 caattgctaatgagaattgaggattgaacagttctattgtttttcttttcaagacaaagaatcaa--gaaaatgggagcagggacgt-ccaaattacaat 43651654  T
Q  131 tgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat 211  Q
    |||||||||| ||||||||| | ||| ||| |||| ||||||| ||||||||| |   ||||| ||||||||| |||||||    
T  43651653 tgcaagagacatttcatccaaagatagagaggaaa-catgaca-ggtttcaccgaagatctatatttcttatctcttttat 43651575  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 21114959 - 21114784
Alignment:
Q  31 caattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnnccaatgaaaatgggagtatggacgttccaaattacaat 130  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||| ||| |||       | |  ||||||||||| | |||||| ||||||||||||    
T  21114959 caattgctaatgagaattgaggattgaacagttctattgtttttcttttcaagacaaagaatcaa--gaaaatgggagcagggacgt-ccaaattacaat 21114863  T
Q  131 tgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat 211  Q
    |||||||||| ||||||||| | ||| ||| |||| ||||||| ||||||||| |   ||||| ||||||||| |||||||    
T  21114862 tgcaagagacatttcatccaaagatagagaggaaa-catgaca-ggtttcaccgaagatctatatttcttatctcttttat 21114784  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 7807676 - 7807628
Alignment:
Q  33 attgctaatgagaattgaggattgagcggctctattgtttttcttctca 81  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  7807676 attgctaataagaattgaggattgagcggtactattgtttttcttctca 7807628  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 39482516 - 39482402
Alignment:
Q  100 aaatgggagtatggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttct 199  Q
    ||||||||| | ||||||||||||||||||||| ||||||| ||||||| | |  || | | | || ||||||||||||| ||||| | || || ||| |    
T  39482516 aaatgggagcagggacgttccaaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttat 39482418  T
Q  200 tatcccttttatcatc 215  Q
    |||| |||||||||||    
T  39482417 tatctcttttatcatc 39482402  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 24863692 - 24863595
Alignment:
Q  112 ggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat 211  Q
    |||||| |||||| ||||||||||||||| ||| ||||| | ||| ||| |||| ||||||| |||||||||||   ||||| ||||||||| |||||||    
T  24863692 ggacgtcccaaataacaattgcaagagacatttaatccaaagatagagaggaaa-catgaca-ggtttcaccaaagatctatatttcttatctcttttat 24863595  T

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