View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0585_low_19 (Length: 291)

Name: NF0585_low_19
Description: NF0585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0585_low_19
NF0585_low_19
[»] chr8 (9 HSPs)
chr8 (87-291)||(5921120-5921324)
chr8 (87-260)||(5949043-5949216)
chr8 (87-260)||(5960308-5960481)
chr8 (87-260)||(5984571-5984744)
chr8 (90-259)||(5887180-5887349)
chr8 (97-259)||(5843041-5843203)
chr8 (97-259)||(5849783-5849945)
chr8 (121-174)||(41351226-41351279)
chr8 (123-197)||(39916636-39916710)
[»] chr2 (2 HSPs)
chr2 (118-251)||(42788930-42789063)
chr2 (118-154)||(27172818-27172854)
[»] chr3 (2 HSPs)
chr3 (119-179)||(34626700-34626760)
chr3 (123-174)||(44674038-44674089)
[»] chr7 (1 HSPs)
chr7 (114-179)||(45676080-45676145)
[»] chr4 (2 HSPs)
chr4 (121-176)||(43560551-43560606)
chr4 (119-161)||(24359829-24359871)
[»] chr1 (4 HSPs)
chr1 (123-174)||(16127411-16127462)
chr1 (119-179)||(51044466-51044526)
chr1 (123-174)||(16138921-16138972)
chr1 (114-180)||(37962858-37962924)
[»] chr5 (3 HSPs)
chr5 (124-174)||(1281333-1281383)
chr5 (124-174)||(1319335-1319385)
chr5 (121-174)||(2590843-2590896)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 87 - 291
Target Start/End: Complemental strand, 5921324 - 5921120
Alignment:
Q  87 ttttcatttatatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtgga 186  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5921324 ttttcatttgtatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtgga 5921225  T
Q  187 agtttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattacatagctattatttttctctttttccctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5921224 agtttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattacatagctattatttttctctttttccttc 5921125  T
Q  287 cattt 291  Q
    |||||    
T  5921124 cattt 5921120  T

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Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 87 - 260
Target Start/End: Complemental strand, 5949216 - 5949043
Alignment:
Q  87 ttttcatttatatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtgga 186  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5949216 ttttcatttgtatatcatgatatgtgtaggtctgcagagatgtggaaagagttgaagattaagatggataaattatctaagacctgatttgaaacgtgga 5949117  T
Q  187 agtttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattacat 260  Q
    |||||||||||||||||||  ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  5949116 agtttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggtatattcattacat 5949043  T

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Target: chr8; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 87 - 260
Target Start/End: Complemental strand, 5960481 - 5960308
Alignment:
Q  87 ttttcatttatatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtgga 186  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5960481 ttttcatttgtatatcatgatgtgtgtaggtctggagagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtgga 5960382  T
Q  187 agtttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattacat 260  Q
    ||||||||||| |||||||  ||||||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  5960381 agtttctctcaacaagaagtagcactcattgtagaactccacaacattttaggcaataggtatattcattacat 5960308  T

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Target: chr8; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 87 - 260
Target Start/End: Complemental strand, 5984744 - 5984571
Alignment:
Q  87 ttttcatttatatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtgga 186  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5984744 ttttcatttgtatatcatgatatgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtgga 5984645  T
Q  187 agtttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattacat 260  Q
    |||||||||||||||||||  ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  5984644 agtttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggtatattcattacat 5984571  T

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Target: chr8; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 5887349 - 5887180
Alignment:
Q  90 tcatttatatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagt 189  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887349 tcatttatatatcatgatgtgtgtaggtctgcagagatgcggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagt 5887250  T
Q  190 ttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattaca 259  Q
    ||||||||||||||||  ||||||||| ||||||| |||| ||||||||||||||||||||| |||||||    
T  5887249 ttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggtatatccattaca 5887180  T

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Target: chr8; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 97 - 259
Target Start/End: Complemental strand, 5843203 - 5843041
Alignment:
Q  97 tatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctc 196  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  5843203 tatatcatgatgtgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagtttctctt 5843104  T
Q  197 atcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattaca 259  Q
    || ||||||  ||| ||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  5843103 atgaagaagtagcaatcattatagaactacacagcattctaggcaataggtatatccattaca 5843041  T

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Target: chr8; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 97 - 259
Target Start/End: Complemental strand, 5849945 - 5849783
Alignment:
Q  97 tatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctc 196  Q
    ||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5849945 tatatcatgatatgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctt 5849846  T
Q  197 atcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattaca 259  Q
    || ||||||  ||| ||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  5849845 atgaagaagtagcaatcattatagaactacacagcattctaggcaataggtatatccattaca 5849783  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 41351279 - 41351226
Alignment:
Q  121 caaagatgtggaaagagttgtagattaagatggataaattatctaagacctgat 174  Q
    ||||| ||||| ||||||||| |||||||||||||||||||| | |||||||||    
T  41351279 caaaggtgtggtaagagttgtcgattaagatggataaattatttgagacctgat 41351226  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 39916636 - 39916710
Alignment:
Q  123 aagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctca 197  Q
    |||||||||||| || || ||||| |||||||| |||||||| ||||||||| | || ||||||| |||| ||||    
T  39916636 aagatgtggaaaaagctgcagattgagatggatcaattatctcagacctgatcttaagcgtggaaatttcactca 39916710  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 42789063 - 42788930
Alignment:
Q  118 ctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattc 217  Q
    ||||| ||||||||||| ||||| || || ||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||||| || |||     
T  42789063 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttatta 42788964  T
Q  218 tagaactccacagcattctaggcaataggtatat 251  Q
    | ||||| || | ||||||||| || ||||||||    
T  42788963 ttgaacttcataccattctaggaaacaggtatat 42788930  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 27172854 - 27172818
Alignment:
Q  118 ctgcaaagatgtggaaagagttgtagattaagatgga 154  Q
    ||||||||||||||||||||||| |||||||||||||    
T  27172854 ctgcaaagatgtggaaagagttgcagattaagatgga 27172818  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 34626760 - 34626700
Alignment:
Q  119 tgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaa 179  Q
    |||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||    
T  34626760 tgcaaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaa 34626700  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 44674038 - 44674089
Alignment:
Q  123 aagatgtggaaagagttgtagattaagatggataaattatctaagacctgat 174  Q
    ||||||||| |||||||| ||||| |||||||||||||| ||||||||||||    
T  44674038 aagatgtggcaagagttgcagattgagatggataaattacctaagacctgat 44674089  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 45676145 - 45676080
Alignment:
Q  114 aggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaa 179  Q
    |||| |||| || ||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  45676145 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 45676080  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 43560606 - 43560551
Alignment:
Q  121 caaagatgtggaaagagttgtagattaagatggataaattatctaagacctgattt 176  Q
    |||||||||||||||||||||||||| ||||||||||| ||| | || ||||||||    
T  43560606 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 43560551  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 24359871 - 24359829
Alignment:
Q  119 tgcaaagatgtggaaagagttgtagattaagatggataaatta 161  Q
    |||||||||||||||| |||||||| ||||||||||| |||||    
T  24359871 tgcaaagatgtggaaaaagttgtaggttaagatggatcaatta 24359829  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 16127462 - 16127411
Alignment:
Q  123 aagatgtggaaagagttgtagattaagatggataaattatctaagacctgat 174  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||| |||||    
T  16127462 aagatgtggaaagagttgtagattgagatggattaattatttaagaactgat 16127411  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 51044466 - 51044526
Alignment:
Q  119 tgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaa 179  Q
    ||||||| ||||||||||| |||||||| ||||||||||| ||| | || |||||||||||    
T  51044466 tgcaaaggtgtggaaagagctgtagattgagatggataaactatttgaggcctgatttgaa 51044526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 16138972 - 16138921
Alignment:
Q  123 aagatgtggaaagagttgtagattaagatggataaattatctaagacctgat 174  Q
    |||||||||||||||||||||||| |||||||| || ||| ||| |||||||    
T  16138972 aagatgtggaaagagttgtagattgagatggattaactatttaaaacctgat 16138921  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 37962858 - 37962924
Alignment:
Q  114 aggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaa 180  Q
    |||| ||||||| ||||| |||||||| || |||||||||||||||||  | || ||||||||||||    
T  37962858 aggtttgcaaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaa 37962924  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 1281333 - 1281383
Alignment:
Q  124 agatgtggaaagagttgtagattaagatggataaattatctaagacctgat 174  Q
    |||||||||||||||||||| |||||||||| ||||||| |||| ||||||    
T  1281333 agatgtggaaagagttgtaggttaagatggacaaattatttaagtcctgat 1281383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 1319385 - 1319335
Alignment:
Q  124 agatgtggaaagagttgtagattaagatggataaattatctaagacctgat 174  Q
    ||||||||||||||||||||| | |||||||  ||||||||||| ||||||    
T  1319385 agatgtggaaagagttgtagacttagatggaataattatctaaggcctgat 1319335  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 2590843 - 2590896
Alignment:
Q  121 caaagatgtggaaagagttgtagattaagatggataaattatctaagacctgat 174  Q
    ||||| ||||| ||||||||||| || ||||||||||||||| |||| ||||||    
T  2590843 caaaggtgtggtaagagttgtaggttgagatggataaattatttaaggcctgat 2590896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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