View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0585_low_2 (Length: 478)
Name: NF0585_low_2
Description: NF0585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0585_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 218 - 451
Target Start/End: Complemental strand, 54117853 - 54117614
Alignment:
| Q |
218 |
ttgctcattaagtttgattagctagtaagaaacatttcccaccgtttggctagtttgcttgatgcctaatttgaatagtttccgcacgtctcaataggaa |
317 |
Q |
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| T |
54117853 |
ttgctcattaagtttgattagctagtaagaaacatttcccaccgtttggctagtttgcttgatgcctaatttgaatagtttccgcacgtctcaataggaa |
54117754 |
T |
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| Q |
318 |
taccgtgaagaaaagctacagaagatttcaaatgattgtaagtctgaacttaaaatatactttgatgaagagtgtcttatagatgat------gatgtag |
411 |
Q |
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| T |
54117753 |
taccgtgaagaaaagatacaaaagatttcaaatgattgtaagtctgaacttaaaatatactttgatgaagagtgtcttatagatgatgatgatgatgtag |
54117654 |
T |
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| Q |
412 |
atattcttcaatgctggaagttaaatagtgtttgatttcc |
451 |
Q |
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| T |
54117653 |
atattcttcaatactggaagttaaatagtgtttgatttcc |
54117614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 43 - 216
Target Start/End: Complemental strand, 54118080 - 54117902
Alignment:
| Q |
43 |
agtatgtatcttctcaaactcttgttataagattaatgctataatagttt-caaaaagattaatgatatagtgcttattgatcagtttgagttatatgtt |
141 |
Q |
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| T |
54118080 |
agtatgtatcttctcaaactcttgttataagattaatgctataatagttttcaaaaagattaatgatatagtgcttattgatcagtttgagttatatgtt |
54117981 |
T |
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| Q |
142 |
tcggttgctataattagaaattaaatcaagatatca----ctagaagatcagttgagaagcacgagacttattcattaa |
216 |
Q |
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| T |
54117980 |
tcggttgctataattagaaattaaatcaagatatcactagctagaagatcagttgagaagcacgagacttattcattaa |
54117902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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