View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0585_low_23 (Length: 261)
Name: NF0585_low_23
Description: NF0585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0585_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9412438 - 9412207
Alignment:
| Q |
1 |
aactatcgcgacttgaagtctctctcgcttgtctccaagttgtttctctccatcaccaaccgtcttttcatctcacttacggtctacaacaacggaatag |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9412438 |
aactatcgcgagttgaagtctctctcgcttgtctccaagttgtttctctccatcaccaaccgtcttgtcatctcacttacggtctacaacaacggaatag |
9412339 |
T |
|
| Q |
101 |
gtccttttctcggtagcatactcggtaggttcaccaacctcacctctctcaaaatcaagcgctacaaaagcattgattttaatgtgcttctcggtcaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9412338 |
gtccttttctcggtagcatactcggtaggttcaccaacctcacctctctcaaaatcaagcgctacaaacgcattgattttaatgtgcttctcggtcaaat |
9412239 |
T |
|
| Q |
201 |
ctctcgttttccattgaaactctcatcactta |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
9412238 |
ctctcgttttccattgaaactctcatcactta |
9412207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 32268667 - 32268631
Alignment:
| Q |
186 |
gcttctcggtcaaatctctcgttttccattgaaactc |
222 |
Q |
| |
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| T |
32268667 |
gcttctctgtcaaatctctcgttttccattgaaactc |
32268631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 41900426 - 41900462
Alignment:
| Q |
194 |
gtcaaatctctcgttttccattgaaactctcatcact |
230 |
Q |
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|||||||||||| |||||||||||||||| ||||||| |
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|
| T |
41900426 |
gtcaaatctctcattttccattgaaactcacatcact |
41900462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 7225096 - 7225131
Alignment:
| Q |
197 |
aaatctctcgttttccattgaaactctcatcactta |
232 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
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|
| T |
7225096 |
aaatctctcgttttccattgaaactcacatcactta |
7225131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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