View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0585_low_3 (Length: 471)

Name: NF0585_low_3
Description: NF0585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0585_low_3
NF0585_low_3
[»] chr2 (3 HSPs)
chr2 (87-279)||(29805318-29805510)
chr2 (326-413)||(29805557-29805654)
chr2 (443-471)||(29805645-29805673)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 87 - 279
Target Start/End: Original strand, 29805318 - 29805510
Alignment:
Q  87 acatcatcattcaagattgtctaagttgggttacaccatttacaatcagacttttctcctttgattgaaagcctccaacaatccattttctctaaatgcc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29805318 acatcatcattcaagattgtctaagttgggttacaccatttacaatcagacttttctcctttgattgaaagcctccaacaatccattttctctaaatgcc 29805417  T
Q  187 tacaaaacttcaagatactacatgtaatttgaaatcgttaagaacaataattgagtagataaatttagggtacataaacccacacacgattag 279  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29805418 tacaaaacttcaagatactacatgtaatttgaaatcgttaagaataataattgagtagataaatttagggtacataaacccacacacgattag 29805510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 29805557 - 29805654
Alignment:
Q  326 gatgacaacaattagaactacttaaatttaaa--ctaatttcaaattttaatcaatgcaaatat--------aaggaatatacttacatgaaatgcca 413  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  29805557 gatgacaacaattagaactacttaaatttaaaaactaatttcaaattttaatcaatgcaaatataagggttaaaggaatatacttacatgaaatgcca 29805654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 471
Target Start/End: Original strand, 29805645 - 29805673
Alignment:
Q  443 tgaaatgccattttttagaggcttttcaa 471  Q
    |||||||||||||||||||||||||||||    
T  29805645 tgaaatgccattttttagaggcttttcaa 29805673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University