View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0586-Insertion-2 (Length: 1002)

Name: NF0586-Insertion-2
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0586-Insertion-2
NF0586-Insertion-2
[»] chr6 (1 HSPs)
chr6 (8-1002)||(3219770-3220759)


Alignment Details
Target: chr6 (Bit Score: 857; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 857; E-Value: 0
Query Start/End: Original strand, 8 - 1002
Target Start/End: Complemental strand, 3220759 - 3219770
Alignment:
Q  8 ctccctaataataacaatcccccagttcaatgtaaatcttaaatagttagatcttgagtatcatttgatgttccatgaccttttttctaatgcatttgta 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220759 ctccctaataataacaatccctcagttcaatgtaaatcttaaatagttagatcttgagtatcatttgatgttccatgaccttttttctaatgcatttgta 3220660  T
Q  108 gtgccgagacaccatcggtgcaaaaaccatcgatgcagcaaccatcggtgcaaaaaccatcgatgcagacaccatcggtgcaaaaaccattgatgcagca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220659 gtgccgagacaccatcggtgcaaaaaccatcgatgcagcaaccatcggtgcaaaaaccatcgatgcagacaccatcggtgcaaaaaccattgatgcagca 3220560  T
Q  208 accagcggtgcaaaaaccatcgatgaagaaaccattagtgcaaaaaccatcgatgcagacaccattggtgcaaaaaccattgatgcagcagaaaccatcg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| | || ||||||||| | ||||    |||||||||    
T  3220559 accagcggtgcaaaaaccatcgatgaagaaaccattagtgcaaaaaccatcgatgcagcaaccatcgatgaaaaaaccatcgttgcaa---aaaccatcg 3220463  T
Q  308 atgcagacaccattagtgcaaaaaccattgacgcagcaaccatcggtgcaaaaaccatcgatgcagaaaccgtcagtgcaaaaaccatcgatgcagaaac 407  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  3220462 atgcagacaccattagtgcaaaaaccattgatgcagcaaccatcggtgcaaaaaccatcgatgcagaaaccatcagtgcaaaaaccaacgatgcagaaac 3220363  T
Q  408 catcagtgcaaaaaccagcgatgcagaaaccatcggtgcataaaccatcagtgcaaaaaccatcgatgcagacaccattggtgcaaaaaccattgatgca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220362 catcagtgcaaaaaccagcgatgcagaaaccatcggtgcataaaccatcagtgcaaaaaccatcgatgcagacaccattggtgcaaaaaccattgatgca 3220263  T
Q  508 aaaaccatcggtgcaaaaaccatcgatacataaaccattggtgcaaaaaccatcgatgcagaaaccatcgatgcaaaggaaagcaaagattcccagaaag 607  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3220262 aaaaccatcggtgcaaaaaccatcgatgcataaaccattggtgcaaaaaccatcgatgcataaaccatcgatgcaaaggaaagcaaagattcccagaaag 3220163  T
Q  608 ctgattacaagtgaattcactacggaaccagaagtactatagtgcattgagccagagattgaaatccaacttactatgaatttttgtaactgactgtacc 707  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220162 cttattacaggtgaattcactacggaaccagaagtactatagtgcattgagccagagattgaaatccaacttactatgaatttttgtaactgactgtacc 3220063  T
Q  708 acaagttgggattatgcatagttagttatgattttgatgtaagtacttgatccggatatttatatataaatttgtttcgtcatatcgatgtttatattaa 807  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3220062 acaagatgggattatgcatagttagttatgattttgatgtaagtacttgatccggatatttatatataaatttgttttgtcatatcgatgtttatattaa 3219963  T
Q  808 cgtacttaatacttttccgacaataaactccgaaagtgatcacttgatttagaaagtactaaacatataatttttatttaaaagacatggaatatatatt 907  Q
    | |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219962 catacttaatacttttccgacattaaactctgaaagtgatcacttgatttagaaagtactaaacatataatttttatttaaaagacatggaatatatatt 3219863  T
Q  908 tatagattttagttgggagacatcagattagggtttacaattacacaccattatcaaaacgtaatgttatttttatcgattataattaattaagt 1002  Q
    |||||||| ||||||| |||||||| |||| |||||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||||||||    
T  3219862 tatagattctagttggaagacatcatatta-ggtttacaattacacaccattatcgaaatgtaatgtta-ttttatcggttataattaattaagt 3219770  T

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