View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0586-Insertion-3 (Length: 1011)

Name: NF0586-Insertion-3
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0586-Insertion-3
NF0586-Insertion-3
[»] chr5 (9 HSPs)
chr5 (96-594)||(19212021-19212519)
chr5 (579-911)||(19211684-19212009)
chr5 (96-543)||(19859570-19860015)
chr5 (96-208)||(18156175-18156288)
chr5 (96-207)||(16832141-16832253)
chr5 (96-208)||(20024443-20024555)
chr5 (174-238)||(20506387-20506451)
chr5 (166-208)||(10624337-10624378)
chr5 (928-997)||(19211590-19211660)
[»] chr3 (10 HSPs)
chr3 (96-532)||(14345565-14346001)
chr3 (98-290)||(13101775-13101967)
chr3 (96-287)||(55002354-55002545)
chr3 (115-238)||(14133305-14133427)
chr3 (103-238)||(1934645-1934773)
chr3 (99-208)||(43135576-43135686)
chr3 (96-208)||(132442-132555)
chr3 (470-546)||(13101496-13101572)
chr3 (166-208)||(13023905-13023947)
chr3 (173-238)||(12021543-12021608)
[»] chr7 (9 HSPs)
chr7 (103-539)||(10478189-10478625)
chr7 (96-258)||(18450762-18450924)
chr7 (96-208)||(41239215-41239327)
chr7 (103-208)||(16713271-16713376)
chr7 (103-208)||(17687507-17687612)
chr7 (96-208)||(10827787-10827900)
chr7 (96-208)||(11021579-11021692)
chr7 (96-208)||(40342844-40342957)
chr7 (166-208)||(24876428-24876470)
[»] chr8 (13 HSPs)
chr8 (96-291)||(22698722-22698917)
chr8 (96-294)||(18846698-18846893)
chr8 (96-292)||(17840027-17840223)
chr8 (96-184)||(17637861-17637949)
chr8 (96-283)||(15911667-15911857)
chr8 (96-208)||(18735402-18735514)
chr8 (173-238)||(16777949-16778014)
chr8 (174-238)||(12821294-12821358)
chr8 (166-208)||(22698162-22698204)
chr8 (166-207)||(15337344-15337385)
chr8 (166-207)||(15426409-15426450)
chr8 (166-207)||(15517713-15517754)
chr8 (490-541)||(18846451-18846502)
[»] chr2 (19 HSPs)
chr2 (96-238)||(20442215-20442357)
chr2 (110-238)||(23995667-23995795)
chr2 (103-238)||(20524138-20524274)
chr2 (100-277)||(25966183-25966360)
chr2 (96-208)||(30051894-30052007)
chr2 (96-208)||(30142938-30143051)
chr2 (96-223)||(30089909-30090037)
chr2 (96-223)||(30126514-30126642)
chr2 (96-238)||(20281141-20281283)
chr2 (96-208)||(34827617-34827730)
chr2 (96-255)||(21904964-21905124)
chr2 (96-198)||(23769375-23769478)
chr2 (166-208)||(21256531-21256573)
chr2 (96-208)||(22593772-22593885)
chr2 (169-208)||(23870586-23870625)
chr2 (174-238)||(22648574-22648638)
chr2 (101-204)||(37130437-37130541)
chr2 (166-208)||(22708200-22708242)
chr2 (166-208)||(28567783-28567824)
[»] scaffold0058 (1 HSPs)
scaffold0058 (96-278)||(15019-15203)
[»] scaffold0035 (1 HSPs)
scaffold0035 (96-238)||(25744-25886)
[»] chr1 (12 HSPs)
chr1 (96-238)||(21550524-21550666)
chr1 (96-247)||(18530538-18530689)
chr1 (96-208)||(4361632-4361745)
chr1 (96-283)||(16406766-16406956)
chr1 (173-291)||(9165934-9166052)
chr1 (96-208)||(21168335-21168447)
chr1 (96-205)||(50826413-50826522)
chr1 (166-208)||(21076591-21076633)
chr1 (167-208)||(27902050-27902091)
chr1 (178-229)||(22509072-22509123)
chr1 (453-543)||(18530220-18530308)
chr1 (167-208)||(27131737-27131778)
[»] scaffold0171 (1 HSPs)
scaffold0171 (96-229)||(26919-27052)
[»] scaffold1496 (1 HSPs)
scaffold1496 (96-238)||(1398-1540)
[»] scaffold0239 (2 HSPs)
scaffold0239 (110-229)||(5552-5671)
scaffold0239 (110-190)||(1-81)
[»] scaffold0126 (1 HSPs)
scaffold0126 (103-238)||(31222-31357)
[»] chr4 (8 HSPs)
chr4 (99-209)||(1658616-1658726)
chr4 (161-208)||(27812386-27812433)
chr4 (166-208)||(31079824-31079866)
chr4 (174-238)||(13292668-13292732)
chr4 (96-208)||(10267253-10267365)
chr4 (174-238)||(13277290-13277354)
chr4 (96-205)||(49526455-49526566)
chr4 (166-208)||(14022490-14022532)
[»] scaffold0297 (1 HSPs)
scaffold0297 (96-208)||(8772-8885)
[»] scaffold0168 (1 HSPs)
scaffold0168 (96-208)||(1396-1509)
[»] chr6 (10 HSPs)
chr6 (166-277)||(20440693-20440805)
chr6 (173-277)||(20450689-20450793)
chr6 (173-277)||(20438070-20438175)
chr6 (96-208)||(26460578-26460691)
chr6 (99-208)||(11794132-11794242)
chr6 (96-205)||(16597238-16597348)
chr6 (173-277)||(20443263-20443368)
chr6 (168-208)||(19272376-19272416)
chr6 (492-542)||(20437791-20437841)
chr6 (173-277)||(20445818-20445925)
[»] scaffold0504 (2 HSPs)
scaffold0504 (96-238)||(614-757)
scaffold0504 (490-544)||(1006-1060)
[»] scaffold0190 (1 HSPs)
scaffold0190 (99-208)||(7450-7560)
[»] scaffold0151 (1 HSPs)
scaffold0151 (99-208)||(14139-14248)
[»] scaffold0770 (1 HSPs)
scaffold0770 (96-208)||(3692-3804)
[»] scaffold0029 (1 HSPs)
scaffold0029 (96-208)||(101996-102108)
[»] scaffold0130 (1 HSPs)
scaffold0130 (174-238)||(39856-39920)
[»] scaffold0081 (1 HSPs)
scaffold0081 (174-238)||(44331-44395)
[»] scaffold0480 (1 HSPs)
scaffold0480 (166-208)||(3723-3765)
[»] scaffold0077 (1 HSPs)
scaffold0077 (166-208)||(12352-12394)
[»] scaffold0012 (1 HSPs)
scaffold0012 (99-208)||(250076-250186)
[»] scaffold0100 (1 HSPs)
scaffold0100 (96-208)||(9012-9124)
[»] scaffold0063 (1 HSPs)
scaffold0063 (166-207)||(70667-70708)
[»] scaffold0016 (1 HSPs)
scaffold0016 (167-208)||(200149-200189)
[»] scaffold0282 (1 HSPs)
scaffold0282 (174-238)||(8829-8893)
[»] scaffold0022 (1 HSPs)
scaffold0022 (174-238)||(58498-58562)
[»] scaffold0001 (1 HSPs)
scaffold0001 (174-238)||(390079-390143)
[»] scaffold0509 (2 HSPs)
scaffold0509 (177-238)||(1293-1354)
scaffold0509 (177-238)||(7721-7782)
[»] scaffold0023 (1 HSPs)
scaffold0023 (174-207)||(6727-6760)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 96 - 594
Target Start/End: Complemental strand, 19212519 - 19212021
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||||||| |||| |||||||| |||||| || |||||||  |||||||||||| | ||||||| |||||| |||||||||||||||| | ||||    
T  19212519 tgcattgattgaatgtaaattggtacacagattcgtacattttgatgtgtaactcgtttatctctaaatgcggatagtttgagtgtaagttttttatatg 19212420  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacacataaacattcgaaactataaccgctactaacggctatg 295  Q
    ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  19212419 attgaattgtgacctgtttttcctatgaaaaactgatatttattatagaaaactaactacacataaacattcgaaacaataactgctactaacggctatg 19212320  T
Q  296 aacatatgttggctttgaaattcaaatggcattccttcaaagcaaccgttatttggctttatctggaaccaattcttcttcgacgccttcttgcctgtcg 395  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19212319 aacatatgttggctttgaaattcaaatgacattccttcaaagcaaccgttatttggctttatctgtaaccaattcttcttcgacgccttcttgcctgtcg 19212220  T
Q  396 aactataatcttcgaaacaaaaaatcttgctaagtccatactctcgaccaaataaagatgtcgaatatattagccttttcttcaaaatctaaattcaaac 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19212219 aactataatcttcgaaacaaaaaatcttgctaagtccatactctcgaccaaataaagatgtcgaatatattagccttttcttcaaaatctaaattcaaac 19212120  T
Q  496 tccattgactgcatttaatataacctgtcgaaaatgctggctaacaataggtgccatgtattttaannnnnnnataatcttttaagtacttcatttatt 594  Q
    | |||||||||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||||       ||||||||||||| ||||||||||||    
T  19212119 ttcattgactgcatttaatataacctgttgaaaatgcatgctaacactaggtgccatgtattttaatttttttataatcttttaagaacttcatttatt 19212021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 579 - 911
Target Start/End: Complemental strand, 19212009 - 19211684
Alignment:
Q  579 aagtacttcatttattctaaaataataaatttatcttgatccttaatttttatttgagttatctacttttgtacaatttttcaagattggtttgtcttcg 678  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19212009 aagtacttcatttattctaaaataataaatttatcttgatccttaatttttatttgagttatctacttttgtacaatttttcgagattggtttgtcttcg 19211910  T
Q  679 taagaaacacatgttcactgacctaatccctctttttattggatttaagagcttctaaaattaaaagagtaaatccttattttcgtctctgaaagtaaca 778  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19211909 taagaaacacaagttcactgacctgatccctctttttattggatttaagagcttctaaaattaaaagagtaaatccttattttcgtctctgaaaggaaca 19211810  T
Q  779 ttcgttgtcaaacacgtcactagatcaattaaaattattaaaaactccttctatgttaattttggtagataatttaacctaaaatgttaactatatgtta 878  Q
    |||||||||||||||     | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19211809 ttcgttgtcaaacac-----tggatcaattaaaattattaaaaactcctcctatgttaattttggtagataatttaaccttaaatgttaactatatgtta 19211715  T
Q  879 ggtgtgttcctttcaaaaactaaaaactatatc 911  Q
    |||||||||| |||||||| ||||||| |||||    
T  19211714 ggtgtgttcc-ttcaaaaa-taaaaacaatatc 19211684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 96 - 543
Target Start/End: Original strand, 19859570 - 19860015
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||||||| |||| |||||||| | ||||||| |||  |||||||||||||||||| | || ||   |||| ||||||||||||||||||||||     
T  19859570 tgcattgattgaatgtaaattggtacacaaattcatacattgggacttgtaactcgtttctctttagatgttgatagtttgagtgtaagttttctgtatt 19859669  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacacataaacattcgaaactataaccgctactaacggctatg 295  Q
     ||||||||||||  | ||||||||||||||||||||||||||  |||||||||| ||||||||  ||| ||||||||||||| ||||| ||| | || |    
T  19859670 gttgaattgtgacccgtttttcctatgagaaactgatatttatactagaaaactagctacacatggacactcgaaactataactgctaccaacagttacg 19859769  T
Q  296 aacatatgttggctttgaaattcaaatggcattccttcaaagcaaccgttatttggctttatctggaaccaattcttcttcgacgccttcttgcctgtcg 395  Q
    ||||    || | ||||||||||||||||||| | ||  || ||||| ||| ||| ||||| ||  |||||||  |||||||||| || |||| ||||||    
T  19859770 aacaccacttcgatttgaaattcaaatggcatcctttagaaacaaccattacttgactttaccttaaaccaatctttcttcgacgtctccttgtctgtcg 19859869  T
Q  396 aactataatcttcgaaacaaaaaatcttgctaagtccatactctcgaccaaataaagatgtcgaatatattagccttttcttcaaaatctaaattcaaac 495  Q
    |||| |||| ||| |||| || |||||||||||||  |||   |||||||| ||| ||||||||| ||||||  ||||||||| |||     | ||||||    
T  19859870 aactctaatattcaaaac-aacaatcttgctaagtttatatcttcgaccaagtaatgatgtcgaacatatta-acttttcttcgaaactcggagtcaaac 19859967  T
Q  496 tccattgactgcatttaatataacctgtcgaaaatgctggctaacaat 543  Q
    | |||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  19859968 ttcattgattgcatttaatatagcctgtcaaaaatgcaggctaacaat 19860015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 18156288 - 18156175
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    |||||||||||||  ||| |||||||| ||||||||| |||   |||||| |||||||||| |||   || ||||||||||||||||||||||| |||||    
T  18156288 tgcattgattgaatataaattggtacacagattcatacattgcaacttgtgactcgtttctctcttccatgcggataatttgagtgtaagttttgtgtat 18156189  T
Q  195 gattgaattgtgac 208  Q
    ||||| ||||||||    
T  18156188 gattggattgtgac 18156175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 16832253 - 16832141
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatcta-aattcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| |||   |||||| |||||||||| |||  ||| ||||||||||||||||||||||| |||||    
T  16832253 tgcattgattgaatgtaaattggtacacatgttcatacattgcaacttgtgactcgtttctctcttcaatgcggataatttgagtgtaagttttgtgtat 16832154  T
Q  195 gattgaattgtga 207  Q
    ||||| |||||||    
T  16832153 gattggattgtga 16832141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 20024443 - 20024555
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||  |||||||| | ||||||| |||   |||||| |||||||||| |||   || ||||||||||||||||||||||| |||||    
T  20024443 tgcattgattgaatgtagattggtacacatattcatacattgcaacttgtgactcgtttctctcttccatgcggataatttgagtgtaagtttt-tgtat 20024541  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  20024542 gattgaattgtgac 20024555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 20506387 - 20506451
Alignment:
Q  174 ttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||||||||  |||||||||||||||||| || |||||||| || |||||  |||||||    
T  20506387 ttgagtgtaagttttgagtatgattgaattgtgacctgtttttcctaagaaaaactactatttat 20506451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 10624378 - 10624337
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  10624378 cggataatttgagtgtaagtttt-tgtatgatagaattgtgac 10624337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 928 - 997
Target Start/End: Complemental strand, 19211660 - 19211590
Alignment:
Q  928 caaaatgatatatatt-acaacaacagtacaatcactcgcacaagatttgttaaagaaaaacatcgctcaa 997  Q
    |||||||||||||||| |||||||| |||||||| | |||||||| | || ||| |||||||| |||||||    
T  19211660 caaaatgatatatattaacaacaacggtacaatcccccgcacaaggtgtgctaaggaaaaacaccgctcaa 19211590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 96 - 532
Target Start/End: Original strand, 14345565 - 14346001
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||||||| |||| || ||||| | ||||||| |||||||||| |||||||||||| |||||||  ||||| ||||||  |||||||||||| |     
T  14345565 tgcattgattgaatgtaaattagtacacaaattcatacattttgacttataactcgtttctctctaaatgtggatagtttgagcataagttttctgtgta 14345664  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacacataaacattcgaaactataaccgctactaacggctatg 295  Q
     ||||||||||||  | ||||||||||||||| | ||||||||  ||||||||||  |||||||| ||||| ||||||||||| |||||||||  ||| |    
T  14345665 gttgaattgtgacccgtttttcctatgagaaatttatatttatactagaaaactacttacacatagacattagaaactataactgctactaacatctagg 14345764  T
Q  296 aacatatgttggctttgaaattcaaatggcattccttcaaagcaaccgttatttggctttatctggaaccaattcttcttcgacgccttcttgcctgtcg 395  Q
    |||   | |||||||||||||||||||||||||| || ||| ||| |||||||||| |||||||||||||||| |||||||||||||||||||||| |||    
T  14345765 aactcctcttggctttgaaattcaaatggcattcgttaaaaacaatcgttatttggttttatctggaaccaatccttcttcgacgccttcttgcctctcg 14345864  T
Q  396 aactataat-cttcgaaacaaaaaatcttgctaagtccatactctcgaccaaataaagatgtcgaatatattagccttttcttcaaaatctaaattcaaa 494  Q
     ||||||||  || ||||||| ||||||||||||||||||||| || || |||||||||||||||||| ||||  ||||||||||||||||||| |||||    
T  14345865 cactataatattttgaaacaacaaatcttgctaagtccatactttccactaaataaagatgtcgaatacatta-acttttcttcaaaatctaaagtcaaa 14345963  T
Q  495 ctccattgactgcatttaatataacctgtcgaaaatgc 532  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  14345964 ctccattgactgcatttaatatagcctgttgaaaatgc 14346001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 98 - 290
Target Start/End: Complemental strand, 13101967 - 13101775
Alignment:
Q  98 cattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatgat 197  Q
    ||||||||||| |||| |||||||| ||||| ||| |||| |||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||| |    
T  13101967 cattgattgaatgtaaattggtacacagatttatacatttcgacttgtaactcgtttctctctaaatgcggatagtttgagtgtatgttttctgtatggt 13101868  T
Q  198 tgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacacataaacattcgaaactataaccgctactaacgg 290  Q
    |||| ||||||  | |||||||||||||||||| |||||||  |||||||||| ||||||||| ||||| ||||||||||| ||||| |||||    
T  13101867 tgaactgtgacccgtttttcctatgagaaactgctatttatactagaaaactacctacacatagacatttgaaactataactgctacgaacgg 13101775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 96 - 287
Target Start/End: Original strand, 55002354 - 55002545
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaa-ctcgtttctatctaaattcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||  ||| |||| ||||||||| ||| |||||||||| ||| | | | ||||||| |||||| |||| ||||||||||| |||||    
T  55002354 tgcattgattgaaagtagattgatacacagattcatacattgtgacttgtaaactcatctgtctctaaatgcggatagtttgcgtgtaagttttttgtat 55002453  T
Q  195 gattgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacacataaacattcgaaactataaccgctactaa 287  Q
    ||||||||||||||  | |||| || |||||||||| |||||||  ||||||||||  | |||||| | ||| ||||||||||| || |||||    
T  55002454 gattgaattgtgacccg-tttttctttgagaaactgctatttatactagaaaactacatgcacatagaaatttgaaactataactgccactaa 55002545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 14133427 - 14133305
Alignment:
Q  115 ttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatgattgaattgtgacatgctt 214  Q
    |||||||||||||||||| ||| |||||||| |||||||||| ||| ||| |||||| ||||||| |||||||| | |||||||||||||||||  | ||    
T  14133427 ttggtacatagattcatacattgtgacttgttactcgtttctctctgaatgcggatagtttgagtataagtttt-tttatgattgaattgtgactcgttt 14133329  T
Q  215 ttcctatgagaaactgatatttat 238  Q
    ||| ||||| |||||  |||||||    
T  14133328 ttcttatgaaaaactattatttat 14133305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 1934645 - 1934773
Alignment:
Q  103 attgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatgattgaat 202  Q
    |||||| ||||||||||||| ||||||||| ||| |||||||| |||||||||| ||| |||       | ||||||||||||||| | |||||||||||    
T  1934645 attgaatgtaagttggtacacagattcatatattgtgacttgttactcgtttctctctgaat-------acttgagtgtaagttttatatatgattgaat 1934737  T
Q  203 tgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||| |  ||||||||||| |||||  |||||||    
T  1934738 tgtgacctatttttcctatgaaaaactactatttat 1934773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 43135576 - 43135686
Alignment:
Q  99 attgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtatgat 197  Q
    |||||||||| |||| |||||||| |  |||||| |||   |||||| |||||||||| |||   || ||||||||||||||||||||||| ||||||||    
T  43135576 attgattgaatgtaaattggtacacatgttcatacattacaacttgtgactcgtttctctcttccatgcggataatttgagtgtaagttttttgtatgat 43135675  T
Q  198 tgaattgtgac 208  Q
    |||||||||||    
T  43135676 tgaattgtgac 43135686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 132442 - 132555
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| |||   |||||| |||||||||| |||   || |  |||||||| ||||||||||| |||||    
T  132442 tgcattgattgaatgtaaattggtacacatgttcatacattgcaacttgtgactcgtttctctcttccatgcaaataatttgcgtgtaagttttttgtat 132541  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  132542 gattgaattgtgac 132555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 470 - 546
Target Start/End: Complemental strand, 13101572 - 13101496
Alignment:
Q  470 cttttcttcaaaatctaaattcaaactccattgactgcatttaatataacctgtcgaaaatgctggctaacaatagg 546  Q
    |||||||||||||   ||| |||||||| ||||| |||||||||||||  ||||||||||||   ||||||||||||    
T  13101572 cttttcttcaaaacacaaagtcaaactctattgagtgcatttaatatagtctgtcgaaaatgaaagctaacaatagg 13101496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 13023947 - 13023905
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    |||| ||||||||||||||||||  ||||||||||||||||||    
T  13023947 cggacaatttgagtgtaagtttttagtatgattgaattgtgac 13023905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 12021543 - 12021608
Alignment:
Q  173 tttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    ||||||||||||||||  |||||||||||||||||| |  |||||||| || |||||  |||||||    
T  12021543 tttgagtgtaagtttttagtatgattgaattgtgacctctttttcctaagaaaaactactatttat 12021608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 8e-70; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 103 - 539
Target Start/End: Original strand, 10478189 - 10478625
Alignment:
Q  103 attgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatgattgaat 202  Q
    |||||| |||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||  ||||| ||||||||||||||||||||||| ||||||    
T  10478189 attgaatgtaaattggtacacagattcatacattttgacttgtaactcgtttctctctaaatgtggatagtttgagtgtaagttttctgtatggttgaat 10478288  T
Q  203 tgtgacatgcttttcctatgagaaactgatatttattatag-aaaactaactacacataaacattcgaaactataaccgctactaacggctatgaacata 301  Q
    ||||||  | |||||||||||||||||  |||| ||  ||| ||||||| ||||||||| | ||  || |||||||| | ||  || || || |||||      
T  10478289 tgtgacccgtttttcctatgagaaacttctattaatactagaaaaactacctacacatagaaatgtgatactataactgttaacaatggttacgaacacc 10478388  T
Q  302 tgttggctttgaaattcaaatggcattccttcaaagcaaccgttatttggctttatctggaaccaa-ttcttcttcgacgccttcttgcctgtcgaacta 400  Q
    | || | |||||||||||||||||||||||| |||||| | |||| ||| ||||||||| |||||| || | |||||||  |||||||  |||||||| |    
T  10478389 tcttcgatttgaaattcaaatggcattccttgaaagcatctgttaattgtctttatctgaaaccaacttgtacttcgacatcttcttgtatgtcgaacca 10478488  T
Q  401 taatcttcgaaacaaaaaatcttgctaagtccatactctcgaccaaataaagatgtcgaatatattagccttttcttcaaaatctaaattcaaactccat 500  Q
    |||||||| |||| ||  ||||||||| |||||   | |||||||||||| |||||| || ||||||| ||||||||  ||||  ||| |||||||||||    
T  10478489 taatcttcaaaac-aactatcttgctaggtccacgttttcgaccaaataatgatgtcaaacatattag-cttttctttgaaattcaaagtcaaactccat 10478586  T
Q  501 tgactgcatttaatataacctgtcgaaaatgctggctaa 539  Q
    ||||||||||||||||| || || |||||||| ||||||    
T  10478587 tgactgcatttaatatagcccgttgaaaatgcaggctaa 10478625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 96 - 258
Target Start/End: Complemental strand, 18450924 - 18450762
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||||||| |||  |||||||| | ||||||| ||| |||||||| |||||||||| ||||||| || ||| ||| |||||||||||||||||||    
T  18450924 tgcattgattgaatgtacattggtacacaaattcatacattatgacttgttactcgtttctctctaaatgcgaatagtttaagtgtaagttttctgtatg 18450825  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacaca 258  Q
     |||||||||||| || |||||| ||| |||||| ||||||||  ||||||| ||||||||||    
T  18450824 gttgaattgtgacctgtttttcccatgggaaactaatatttatactagaaaattaactacaca 18450762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 41239215 - 41239327
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    |||||||||| || |||| |||||||| ||||||||| ||| |||||||| |||||||||| ||| ||| |||||| |||||| ||||||||| ||||||    
T  41239215 tgcattgattaaatgtaaattggtacacagattcatacattgtgacttgttactcgtttctctctgaatccggatagtttgagcgtaagttttatgtatg 41239314  T
Q  196 attgaattgtgac 208  Q
    |||||||||||||    
T  41239315 attgaattgtgac 41239327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 16713271 - 16713376
Alignment:
Q  103 attgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatgattgaat 202  Q
    |||||| |||| |||||||| | ||||||| ||  |||||| | |||||||||| ||| ||| | |||| |||||||||| |||||||||||||||||||    
T  16713271 attgaatgtaaattggtacacatattcatacatcgtgacttattactcgtttctctctgaatgcagatagtttgagtgtacgttttctgtatgattgaat 16713370  T
Q  203 tgtgac 208  Q
    ||||||    
T  16713371 tgtgac 16713376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 17687507 - 17687612
Alignment:
Q  103 attgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatgattgaat 202  Q
    |||||| |||| |||||||| | ||||||| ||  |||||| | |||||||||| ||| ||| | |||| |||||||||| |||||||||||||||||||    
T  17687507 attgaatgtaaattggtacacatattcatacatcgtgacttattactcgtttctctctgaatgcagatagtttgagtgtacgttttctgtatgattgaat 17687606  T
Q  203 tgtgac 208  Q
    ||||||    
T  17687607 tgtgac 17687612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 10827787 - 10827900
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| || | |||||||| ||||||||| |||   |||||| |||||||||| |||   || ||||||||||||||||||||||| |||||    
T  10827787 tgcattgattgaatgtgaattggtacacagattcatacattgcaacttgtgactcgtttctctcttccatgcggataatttgagtgtaagttttgtgtat 10827886  T
Q  195 gattgaattgtgac 208  Q
    ||||| | ||||||    
T  10827887 gattggactgtgac 10827900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 11021579 - 11021692
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| || | |||||||| ||||||||| |||   |||||| |||||||||| |||   || ||||||||||||||||||||||| |||||    
T  11021579 tgcattgattgaatgtgaattggtacacagattcatacattgcaacttgtgactcgtttctctcttccatgcggataatttgagtgtaagttttgtgtat 11021678  T
Q  195 gattgaattgtgac 208  Q
    ||||| | ||||||    
T  11021679 gattggactgtgac 11021692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 40342844 - 40342957
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    |||||||||| || |||| |||||||| |  |||||| |||   |||||| |||||||||| |||   || ||||||||||||||||||||||| |||||    
T  40342844 tgcattgattaaatgtaaattggtacacatgttcatacattgcaacttgtgactcgtttctctcttccatgcggataatttgagtgtaagttttttgtat 40342943  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  40342944 gattgaattgtgac 40342957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 24876428 - 24876470
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  24876428 cggataatttgagtgtaagttttttgtatgattgaattgtgac 24876470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 9e-42; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 96 - 291
Target Start/End: Original strand, 22698722 - 22698917
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||||||| |||| ||||||   | ||||||| ||||||| ||||||||| ||||| |||| || ||||||||||||||||||||||||||||||    
T  22698722 tgcattgattgaaagtaaattggtatgcatattcatacattttgatttgtaactcatttctctctacatgcggataatttgagtgtaagttttctgtatg 22698821  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacacataaacattcgaaactataaccgctactaacggc 291  Q
     ||||||||||||    |||||||||||||||||| |||||||  || ||||||| ||| ||||| ||||||||||| ||||| || |||||||||    
T  22698822 gttgaattgtgacccttttttcctatgagaaactgttatttatactacaaaactacctatacatagacattcgaaaccataactgccactaacggc 22698917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 96 - 294
Target Start/End: Complemental strand, 18846893 - 18846698
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||||||| |||| || ||||| ||||||||| ||| |||||||| |||||||||| |||| || |||||| ||| |||||||||||||||||||    
T  18846893 tgcattgattgaatgtaaatttgtacacagattcatacattctgacttgttactcgtttctctctagatacggatagtttaagtgtaagttttctgtatg 18846794  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacacataaacattcgaaactataaccgctactaacggctat 294  Q
     ||||||| | || |  |||| |||||||||||| |||||||| ||||||||||| ||||| | | |||||||||||  |||| |||| ||||||||||    
T  18846793 gttgaattataac-tcgtttttctatgagaaactaatatttataatagaaaactacctacatagagacattcgaaac--taactgctattaacggctat 18846698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 96 - 292
Target Start/End: Original strand, 17840027 - 17840223
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||||||| |||| |||| ||||||||||||| ||| |||||  |||||||||||| |||| ||  ||||| ||| ||||| | |||||| ||||    
T  17840027 tgcattgattgaaagtaaattgggacatagattcatacattgtgactgataactcgtttctctctagatgtggatagtttaagtgtgaattttctatatg 17840126  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacacataaacattcgaaactataaccgctactaacggct 292  Q
    | || ||||||||    |||| |||||| ||| || |||||||  || ||||||| || |||||| ||||| ||||||||||| ||  |||||||||    
T  17840127 aatgtattgtgaccctttttttctatgaaaaattgttatttatactaaaaaactacctgcacatagacatttgaaactataactgcccctaacggct 17840223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 17637861 - 17637949
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaag 184  Q
    ||||||||||||| |||| ||||||||  |||||||| ||| |||||||| |||||||||| ||| ||| |||||| ||||||||||||    
T  17637861 tgcattgattgaatgtaaattggtacacggattcatacattgtgacttgttactcgtttctctctgaatgcggatagtttgagtgtaag 17637949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 283
Target Start/End: Complemental strand, 15911857 - 15911667
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatcta-aattcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| ||| | |||||| |||||||||| |||  ||| |||||| |||||||||||||||| |||||    
T  15911857 tgcattgattgaatgtaaattggtacacatgttcatacattgtaacttgtgactcgtttctctcttgaatgcggatagtttgagtgtaagttttgtgtat 15911758  T
Q  195 gattgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactac--acataaacattcgaaactataaccgcta 283  Q
    |||||  ||||||| |  ||| | ||||| |||||  |||||||  ||||| | |||||||  |||| || ||| ||||||||||| ||||    
T  15911757 gattggtttgtgacctattttccttatgaaaaactactatttatactagaagaataactacctacattaagatttgaaactataactgcta 15911667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 18735514 - 18735402
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||  |||||||| | ||||||| |||   |||||| |||||||||| |||   || ||||||||||||||||||||||| |||||    
T  18735514 tgcattgattgaatgtagattggtacagatattcatacattgcaacttgtgactcgtttctttcttccatgcggataatttgagtgtaagtttt-tgtat 18735416  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  18735415 gattgaattgtgac 18735402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 16778014 - 16777949
Alignment:
Q  173 tttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||||||||||||||||||||||||||||   | ||||||||||| |||||  |||||||    
T  16778014 tttgagtgtaagttttctgtatgattgaattgtgatccgtttttcctatgaaaaactattatttat 16777949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 12821294 - 12821358
Alignment:
Q  174 ttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||| ||||||||||  ||||||||||||||||||||| |||||||| || |||||| |||||||    
T  12821294 ttgattgtaagttttgagtatgattgaattgtgacatgtttttcctaagaaaaactgctatttat 12821358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 22698162 - 22698204
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  22698162 cggataatttgagtgtaagttttttgtatgatagaattgtgac 22698204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 15337385 - 15337344
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtga 207  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  15337385 cggataatttgagtgtaagttttttgtatgatagaattgtga 15337344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 15426450 - 15426409
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtga 207  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  15426450 cggataatttgagtgtaagttttttgtatgatagaattgtga 15426409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 15517754 - 15517713
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtga 207  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  15517754 cggataatttgagtgtaagttttttgtatgatagaattgtga 15517713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 541
Target Start/End: Complemental strand, 18846502 - 18846451
Alignment:
Q  490 tcaaactccattgactgcatttaatataacctgtcgaaaatgctggctaaca 541  Q
    ||||||||||||||||||||| |||||| | |||||||||| | ||||||||    
T  18846502 tcaaactccattgactgcattaaatatagcatgtcgaaaatacaggctaaca 18846451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 20442357 - 20442215
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||| ||| |||| |||||||| ||||||||| ||| |||||||| |||||||| | ||| ||| |||||| ||||| |||||||||||||||||    
T  20442357 tgcattgatcgaatgtaaattggtacagagattcatacattgtgacttgttactcgtttatctctgaatgcggatagtttgattgtaagttttctgtatg 20442258  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||||||||||||||||||||| |||||  |||||||    
T  20442257 attgaattgtgacatgcttttcctatgaaaaactactatttat 20442215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 23995667 - 23995795
Alignment:
Q  110 gtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatgattgaattgtgaca 209  Q
    |||| |||||||| ||||||||| ||| |||||||| |||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  23995667 gtaaattggtacacagattcatacattgtgacttgttactcgtttctctctaaatgcagatagtttgagtgtaagttttctgtatgattgaattgtgaca 23995766  T
Q  210 tgcttttcctatgagaaactgatatttat 238  Q
    || ||||||||| | |||||  |||||||    
T  23995767 tgtttttcctataaaaaactactatttat 23995795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 20524274 - 20524138
Alignment:
Q  103 attgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatct-aaattcggataatttgagtgtaagttttctgtatgattgaa 201  Q
    |||||| |||| |||||||| | ||||||| |||   |||||| |||||||| | ||| |||| |||||| |||||||||||||||||||||||||||||    
T  20524274 attgaatgtaaattggtacaaaaattcatacattgcaacttgtgactcgtttttctcttaaatgcggatagtttgagtgtaagttttctgtatgattgaa 20524175  T
Q  202 ttgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||| ||||||||||| |||||  |||||||    
T  20524174 ttgtgacatgtttttcctatgaaaaactattatttat 20524138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 100 - 277
Target Start/End: Original strand, 25966183 - 25966360
Alignment:
Q  100 ttgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatgattg 199  Q
    ||||||||| |||| ||| ||||  |||||||| ||| |||||| |||||||||||| |||||||  ||||| |||||| |||| ||||||||||  |||    
T  25966183 ttgattgaaagtaaattgatacacggattcatacattgtgacttttaactcgtttctctctaaatgtggatagtttgagcgtaaattttctgtattgttg 25966282  T
Q  200 aattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacacataaacattcgaaactataa 277  Q
    |||| ||||    |||||| | ||||||||| |||||||  |||||||||| ||||||||| | ||| ||||||||||    
T  25966283 aattctgacccctttttccaacgagaaactgttatttatactagaaaactacctacacatagatatttgaaactataa 25966360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 30051894 - 30052007
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattca-tagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtat 194  Q
    ||||| || |||| |||| |||||||| ||||||| || ||| |||||||| |||||||||| ||| ||| |||||| ||||||||||||||||||||||    
T  30051894 tgcatagactgaatgtaaattggtacacagattcaatacattgtgacttgttactcgtttctctctgaatgcggatagtttgagtgtaagttttctgtat 30051993  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  30051994 gattgaattgtgac 30052007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 30142938 - 30143051
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattca-tagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtat 194  Q
    ||||| || |||| |||| |||||||| ||||||| || ||| |||||||| |||||||||| ||| ||| |||||| ||||||||||||||||||||||    
T  30142938 tgcatagactgaatgtaaattggtacacagattcaatacattgtgacttgttactcgtttctctctgaatgcggatagtttgagtgtaagttttctgtat 30143037  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  30143038 gattgaattgtgac 30143051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 30089909 - 30090037
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattca-tagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtat 194  Q
    ||||| || |||| |||| |||||||| | ||||| || ||| |||||||| |||| ||||| ||| ||| |||||| ||||||||||||||||||||||    
T  30089909 tgcatagactgaatgtaaattggtacacatattcaatacattgtgacttgttactcatttctctctgaatgcggatagtttgagtgtaagttttctgtat 30090008  T
Q  195 gattgaattgtgacatgcttttcctatga 223  Q
    ||||||||||||||  | |||||||||||    
T  30090009 gattgaattgtgacccgtttttcctatga 30090037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 30126514 - 30126642
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattca-tagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtat 194  Q
    ||||| || |||| |||| |||||||| | ||||| || ||| |||||||| |||| ||||| ||| ||| |||||| ||||||||||||||||||||||    
T  30126514 tgcatagactgaatgtaaattggtacacatattcaatacattgtgacttgttactcatttctctctgaatgcggatagtttgagtgtaagttttctgtat 30126613  T
Q  195 gattgaattgtgacatgcttttcctatga 223  Q
    ||||||||||||||  | |||||||||||    
T  30126614 gattgaattgtgacccgtttttcctatga 30126642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 20281141 - 20281283
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||| ||| ||| |||| |||||||| ||| ||||| ||| |||||||| |||||||||| ||| ||| |||||| | ||||||||| |||||||||||    
T  20281141 tgcatagatcgaatgtaaattggtacacagaatcatacattctgacttgttactcgtttctctctgaatgcggatagtatgagtgtaaattttctgtatg 20281240  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    | ||||||||||| || |||| || ||| |||||  |||||||    
T  20281241 actgaattgtgacctgttttttctttgaaaaactactatttat 20281283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 34827617 - 34827730
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| |||   |||||| |||||||||| |||   || | ||||||||||||||||||||| |||||    
T  34827617 tgcattgattgaatgtaaattggtacacatgttcatacattacaacttgtgactcgtttctctcttccatgcagataatttgagtgtaagttttttgtat 34827716  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  34827717 gattgaattgtgac 34827730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 255
Target Start/End: Original strand, 21904964 - 21905124
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatcta-aattcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| ||| | |||||| ||||||| || |||  |||  ||||| |||||||||||||||| |||||    
T  21904964 tgcattgattgaatgtaaattggtacacatgttcatacattgtaacttgtgactcgttcctctcttgaatgtggatagtttgagtgtaagttttttgtat 21905063  T
Q  195 gattgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactac 255  Q
    |||||  ||||||| || ||| ||||||| |||||  |||||||  ||||| | |||||||    
T  21905064 gattggtttgtgacctgttttccctatgaaaaactattatttatactagaagaataactac 21905124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 23769375 - 23769478
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatc-taaattcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| ||| | |||||| |||||||||| || | ||| |||||||||||||||||| |||| |||||    
T  23769375 tgcattgattgaatgtaaattggtacacatgttcatacattgtaacttgtgactcgtttctctcttgaatgcggataatttgagtgtaaattttgtgtat 23769474  T
Q  195 gatt 198  Q
    ||||    
T  23769475 gatt 23769478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 21256531 - 21256573
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  21256531 cggataatttgagtgtaagttttttgtatgattgaattgtgac 21256573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 22593885 - 22593772
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    |||||||||||||  ||| |||||||| |  |||||| |||   |||||| |||||||||| |||   || || |||||||||||||||||||| |||||    
T  22593885 tgcattgattgaatataaattggtacacatgttcatacattgcaacttgtgactcgtttctctcttccatgcgcataatttgagtgtaagttttttgtat 22593786  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  22593785 gattgaattgtgac 22593772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 23870586 - 23870625
Alignment:
Q  169 ataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  23870586 ataatttgagtgtaagttttttgtatgattgaattgtgac 23870625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 22648638 - 22648574
Alignment:
Q  174 ttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||||||||  |||||||||||||||||| || |||||||| || |||||  |||||||    
T  22648638 ttgagtgtaagtttttagtatgattgaattgtgacctgtttttcctaagaaaaactactatttat 22648574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 37130541 - 37130437
Alignment:
Q  101 tgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtatgattg 199  Q
    |||||||| |||| |||||||| |  |||||| |||   |||||| |||||||||| |||   || |||||||||||| |||||||||| ||||||||||    
T  37130541 tgattgaatgtaaattggtacacatgttcatacattgcaacttgtgactcgtttctctcttccatgcggataatttgattgtaagttttttgtatgattg 37130442  T
Q  200 aattg 204  Q
    |||||    
T  37130441 aattg 37130437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 22708242 - 22708200
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    |||||||||| |||||||||||| ||||| |||||||||||||    
T  22708242 cggataatttaagtgtaagttttttgtataattgaattgtgac 22708200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 28567783 - 28567824
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  28567783 cggataatttgagtgtaagtttt-tgtatgatagaattgtgac 28567824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 96 - 278
Target Start/End: Original strand, 15019 - 15203
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||||||| |||| | |||||| | ||||||| ||||||||||||||||||||| | |||| || |||||| ||| |||||||||||| ||| ||    
T  15019 tgcattgattgaatgtaaatcggtacacaaattcatacattttgacttgtaactcgtttatctctagatgcggatagttttagtgtaagttttttgtctg 15118  T
Q  196 attgaattgtgacatgcttttcc-tatgag-aaactgatatttattatagaaaactaactacacataaacattcgaaactataac 278  Q
     |||||||||||| || |||||| |||||| ||| ||||||||||  ||||||||||  ||||||||||||||||||| ||||||    
T  15119 gttgaattgtgacctgtttttccttatgagaaaattgatatttatactagaaaactacatacacataaacattcgaaaatataac 15203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 75; Significance: 5e-34; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 25744 - 25886
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    |||||| ||| ||||||| |||||||| ||||||||| ||| |||||||| |||| ||||| ||||||| |||||||||| |||||||||||||||||||    
T  25744 tgcatttattaaacgtaaattggtacacagattcatacattgtgacttgttactcatttctctctaaatgcggataatttaagtgtaagttttctgtatg 25843  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||||||  | ||||||||||| |||||  |||||||    
T  25844 attgaattgtgacccgtttttcctatgaaaaactactatttat 25886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 1e-31; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 21550666 - 21550524
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||||||| |||| |||||||| | ||||||| ||| |||||||| |||||||||| ||| ||| |||||| |||||||||||||||||||||||    
T  21550666 tgcattgattgaatgtaaattggtacacatattcatacattgtgacttgttactcgtttctctctgaatgcggatagtttgagtgtaagttttctgtatg 21550567  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    ||||||||||||   | ||||||||||| |||||  |||||||    
T  21550566 attgaattgtgatccgtttttcctatgaaaaactactatttat 21550524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 96 - 247
Target Start/End: Complemental strand, 18530689 - 18530538
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||||||| |||| ||||||||  |||||||| |||||||||||||| || ||| | |||| || |||||| |||||||||||||||| ||||||    
T  18530689 tgcattgattgaatgtaaattggtacacggattcatatattttgacttgtaaatcatttttttctagatgcggatagtttgagtgtaagttttttgtatg 18530590  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaa 247  Q
     |||||||||||| || |||||| |||  |||||| |||||||  |||||||    
T  18530589 gttgaattgtgacttgtttttccaatgtaaaactgctatttatactagaaaa 18530538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 4361632 - 4361745
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| |||   |||||| |||||||||| |||   || |||||||||||||| |||||||| |||||    
T  4361632 tgcattgattgaatgtaaattggtacacatgttcatatattgcaacttgttactcgtttctctcttccatgcggataatttgagtataagttttttgtat 4361731  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  4361732 gattgaattgtgac 4361745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 283
Target Start/End: Original strand, 16406766 - 16406956
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatcta-aattcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| || | |||||||| |  |||||| ||| | |||||| |||||||||| |||  |||  ||||| ||| |||||||||||  |||||    
T  16406766 tgcattgattgaatgtcaattggtacacatgttcatacattataacttgtgactcgtttctctcttgaatgtggatagtttaagtgtaagtttcgtgtat 16406865  T
Q  195 gattgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactac--acataaacattcgaaactataaccgcta 283  Q
    ||| |  |||||||||| ||||| ||||| |||||  ||||||| |||||| | |||||||  |||| || ||| ||||||||||| ||||    
T  16406866 gatcggtttgtgacatgtttttcttatgaaaaactactatttataatagaacaataactacctacattaagatttgaaactataacagcta 16406956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 9166052 - 9165934
Alignment:
Q  173 tttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacacataaacattcgaaac 272  Q
    ||||||||||| |||| |||| | |||||||||||| |  |||||| ||||||||  | |||||||| || ||||||| |||| || | ||||| |||||    
T  9166052 tttgagtgtaaattttttgtagggttgaattgtgacctttttttcccatgagaaatggctatttattgtaaaaaactatctacgcacagacatttgaaac 9165953  T
Q  273 tataaccgctactaacggc 291  Q
    |||||| || |||||||||    
T  9165952 tataactgccactaacggc 9165934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 21168335 - 21168447
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||  ||| |||| | ||||||| |||   |||||| |||||||||| |||   || ||||||||||||||||||||||| |||||    
T  21168335 tgcattgattgaatgtagattgctacacatattcatacattgcaacttgtgactcgtttctctcttccatgcggataatttgagtgtaagtttt-tgtat 21168433  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  21168434 gattgaattgtgac 21168447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 50826522 - 50826413
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatct---aaattcggataatttgagtgtaagttttctgt 192  Q
    ||||||||||||| ||||||| || || |||||||||||||   || ||| ||||||||||  ||   |||  ||||||||||||||||||||||| |||    
T  50826522 tgcattgattgaatgtaagttagtgcacagattcatagattgcaacctgtgactcgtttctcgcttccaaa--cggataatttgagtgtaagtttt-tgt 50826426  T
Q  193 atgattgaattgt 205  Q
    |||||||||||||    
T  50826425 atgattgaattgt 50826413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 21076633 - 21076591
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  21076633 cggataatttgagtgtaagtttttagtatgattgaattgtgac 21076591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 27902091 - 27902050
Alignment:
Q  167 ggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  27902091 ggataatttgagtgtaagttttgtgtatgattggattgtgac 27902050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 22509072 - 22509123
Alignment:
Q  178 gtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaact 229  Q
    ||||||||||| ||||||||||||||||||| || ||||| ||||| |||||    
T  22509072 gtgtaagttttgtgtatgattgaattgtgacctgtttttcgtatgaaaaact 22509123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 453 - 543
Target Start/End: Complemental strand, 18530308 - 18530220
Alignment:
Q  453 atgtcgaatatattagccttttcttcaaaatctaaattcaaactccattgactgcatttaatataacctgtcgaaaatgctggctaacaat 543  Q
    |||||||| |||||| | ||||||||||||  ||| | |||||||  ||||||||||||||| || ||||||||||||||  |||||||||    
T  18530308 atgtcgaacatattaac-ttttcttcaaaacataagt-caaactctgttgactgcatttaatctagcctgtcgaaaatgcaagctaacaat 18530220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 27131778 - 27131737
Alignment:
Q  167 ggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    |||||||||||||||||||||| |||||||| | ||||||||    
T  27131778 ggataatttgagtgtaagttttgtgtatgataggattgtgac 27131737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 26919 - 27052
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    ||||||||||||| |||| |||||||| | ||||||| | | ||||||||||||||||||| ||||||| | |||| ||||| |||||||||| ||||||    
T  26919 tgcattgattgaaagtaaattggtacacatattcatacagtgtgacttgtaactcgtttctctctaaatgcagatagtttgattgtaagttttttgtatg 27018  T
Q  196 attgaattgtgacatgcttttcctatgagaaact 229  Q
     ||||||||  || || |||||||||||||||||    
T  27019 gttgaattgcaacctgtttttcctatgagaaact 27052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1496 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold1496
Description:

Target: scaffold1496; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 1540 - 1398
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatg 195  Q
    |||| |||||||| |||| |||||||| ||||||||| ||| |||||||| |||||||||| ||  ||| | |||| ||||||||||||||||| |||||    
T  1540 tgcaatgattgaatgtaaattggtacacagattcatacattctgacttgttactcgtttctctccgaatgcagatagtttgagtgtaagttttccgtatg 1441  T
Q  196 attgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||||||  | ||||| ||||| |||||  |||||||    
T  1440 attgaattgtgacccgtttttcttatgaaaaactactatttat 1398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 5671 - 5552
Alignment:
Q  110 gtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatgattgaattgtgaca 209  Q
    |||| |||||||| |||||  || ||| |||||||| |||| ||||| ||| ||| |||||| |||||||||||||||||| |||||||||||||||||     
T  5671 gtaaattggtacacagattactacattgtgacttgttactcatttctctctgaatgcggatagtttgagtgtaagttttctatatgattgaattgtgacc 5572  T
Q  210 tgcttttcctatgagaaact 229  Q
     | ||||| ||||| |||||    
T  5571 cgtttttcatatgaaaaact 5552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 81 - 1
Alignment:
Q  110 gtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttct 190  Q
    |||| |||||||| |||||| || ||| |||||||| |||| ||||| ||| ||| |||||| ||||||||||||||||||    
T  81 gtaaattggtacacagattcctacattgtgacttgttactcatttctctctgaatgcggatagtttgagtgtaagttttct 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 31222 - 31357
Alignment:
Q  103 attgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaaattcggataatttgagtgtaagttttctgtatgattgaat 202  Q
    |||||| |||| |||||||| ||||||||| ||| ||| |||| || ||||||| | | |||  ||||| ||||||||| |||||||||||||||||||     
T  31222 attgaatgtaaattggtacacagattcatacattgtgatttgttacgcgtttctctttgaatgtggatagtttgagtgttagttttctgtatgattgaac 31321  T
Q  203 tgtgacatgcttttcctatgagaaactgatatttat 238  Q
    | ||||||| |||||||| || |||||  |||||||    
T  31322 tctgacatgtttttcctaagaaaaactactatttat 31357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 1658726 - 1658616
Alignment:
Q  99 attgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatc-taaattcggataatttgagtgtaagttttctgtatgat 197  Q
    |||||||||| ||||||||||||| | ||||||| |||   |||||| |||||||||| || |  || ||||||||||||||||||||||| ||||||||    
T  1658726 attgattgaatgtaagttggtacacatattcatacattgcaacttgtgactcgtttctctcttccatgcggataatttgagtgtaagtttt-tgtatgat 1658628  T
Q  198 tgaattgtgaca 209  Q
     |||||||||||    
T  1658627 agaattgtgaca 1658616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 27812386 - 27812433
Alignment:
Q  161 aaattcggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  27812386 aaatgcggataatttgagtgtaagttttctgtatgattgaattgtgac 27812433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 31079824 - 31079866
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  31079824 cggataatttgagtgtaagttttttgtatgattgaattgtgac 31079866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 13292668 - 13292732
Alignment:
Q  174 ttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||| || |||||  |||||||    
T  13292668 ttgagtgtaagtttttagtatgattgaattgtgacatgtttttcctaagaaaaactactatttat 13292732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 10267365 - 10267253
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| |||   |||||| | |||||||| |||   || ||||||||||||||||||||||| |||||    
T  10267365 tgcattgattgaatgtaaattggtacacatgttcatacattgcaacttgtgattcgtttctctcttccatgcggataatttgagtgtaagtttt-tgtat 10267267  T
Q  195 gattgaattgtgac 208  Q
    ||||||||| ||||    
T  10267266 gattgaattttgac 10267253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 13277290 - 13277354
Alignment:
Q  174 ttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||||||||  |||||||||||||||||| || |||||||| || |||||  |||||||    
T  13277290 ttgagtgtaagtttttagtatgattgaattgtgacctgtttttcctaagaaaaactactatttat 13277354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 49526455 - 49526566
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatc--taaattcggataatttgagtgtaagttttctgta 193  Q
    ||||||||||||| |||| |||||||| |  |||||| |||   |||||| |||||||||| ||  | ||| |||||| ||||| |||||||||| ||||    
T  49526455 tgcattgattgaatgtaaattggtacacatgttcatacattgcaacttgtgactcgtttctctctttgaatgcggatagtttgattgtaagttttgtgta 49526554  T
Q  194 tgattgaattgt 205  Q
    |||||| |||||    
T  49526555 tgattggattgt 49526566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 14022490 - 14022532
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    |||| ||||||||||||||||||  ||||||||||||||||||    
T  14022490 cggacaatttgagtgtaagtttttagtatgattgaattgtgac 14022532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0297 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0297
Description:

Target: scaffold0297; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 8772 - 8885
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatcta-aattcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| ||| | |||||| |||||||||| |||  |||  ||||| |||||||||||||||| |||||    
T  8772 tgcattgattgaatgtaaattggtacacatgttcatacattgtaacttgtgactcgtttctctcttgaatgtggatagtttgagtgtaagttttgtgtat 8871  T
Q  195 gattgaattgtgac 208  Q
    ||||| ||||||||    
T  8872 gattggattgtgac 8885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 1396 - 1509
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| |||   |||||| |||||||||| |||   || ||||||||||||||||||||||| |||||    
T  1396 tgcattgattgaatgtaaattggtacacatgttcatacattgcaacttgtgactcgtttctctcttccatgcggataatttgagtgtaagttttttgtat 1495  T
Q  195 gattgaattgtgac 208  Q
    |||||| |||||||    
T  1496 gattgacttgtgac 1509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 277
Target Start/End: Complemental strand, 20440805 - 20440693
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttattat-agaaaactaactacacataaaca 264  Q
    |||||| |||||||||||||||||| ||||| || |||||||| |  ||| |||||||||||||| |||||||  | | ||||||| ||||||| | |||    
T  20440805 cggatagtttgagtgtaagttttctatatgaatgtattgtgacctcttttccctatgagaaactgttatttatactaaaaaaactacctacacacagaca 20440706  T
Q  265 ttcgaaactataa 277  Q
    || ||||||||||    
T  20440705 tttgaaactataa 20440693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 20450793 - 20450689
Alignment:
Q  173 tttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttattatagaaaactaactacacataaacattcgaaac 272  Q
    |||||||||||||||||| | ||| || |||||||| |  ||| ||||||| |||||| ||||||| ||| ||||||| ||||||| | ||||| |||||    
T  20450793 tttgagtgtaagttttctatttgaatgtattgtgacctcttttccctatgaaaaactgttatttataataaaaaactacctacacacagacatttgaaac 20450694  T
Q  273 tataa 277  Q
    |||||    
T  20450693 tataa 20450689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 20438175 - 20438070
Alignment:
Q  173 tttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttattat-agaaaactaactacacataaacattcgaaa 271  Q
    |||||||||||||||||| ||||| || |||||||| |  ||| |||||||||||||| |||||||  | | ||||||| ||||||| | ||||| ||||    
T  20438175 tttgagtgtaagttttctatatgaatgtattgtgacctcttttccctatgagaaactgttatttatactaaaaaaactacctacacacagacatttgaaa 20438076  T
Q  272 ctataa 277  Q
    ||||||    
T  20438075 ctataa 20438070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 26460578 - 26460691
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| |||   |||||| |||||||| | |||   || ||||||||||||||||||||||| |||||    
T  26460578 tgcattgattgaatgtaaattggtacacatgttcatacattgcaacttgtgactcgtttatctcttccatgcggataatttgagtgtaagttttgtgtat 26460677  T
Q  195 gattgaattgtgac 208  Q
    ||||| ||||||||    
T  26460678 gattggattgtgac 26460691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 11794242 - 11794132
Alignment:
Q  99 attgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtatgat 197  Q
    |||||||||| ||||||||||||| |  |||||| |||   |||||| | |||||| |||||   || |||||||||||||||||| |||| ||||| ||    
T  11794242 attgattgaatgtaagttggtacacatgttcatacattgcaacttgtgattcgtttatatcttccatgcggataatttgagtgtaaattttttgtataat 11794143  T
Q  198 tgaattgtgac 208  Q
    |||||||||||    
T  11794142 tgaattgtgac 11794132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 16597238 - 16597348
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||| |||||||| |  |||||| |||   |||||| |||||||||| |||   || ||||||||||||||||||||||| | |||    
T  16597238 tgcattgattgaatgtaaattggtacacatgttcatacattgcaacttgtcactcgtttctttcttccatgcggataatttgagtgtaagttttttatat 16597337  T
Q  195 gattgaattgt 205  Q
    ||||| |||||    
T  16597338 gattggattgt 16597348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 20443368 - 20443263
Alignment:
Q  173 tttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttattat-agaaaactaactacacataaacattcgaaa 271  Q
    |||||||||||||||||| ||||| || | |||||| |  ||| ||||||| |||||| ||||||| || | ||||||| ||||||| | ||||| ||||    
T  20443368 tttgagtgtaagttttctatatgaatgtactgtgacctcttttccctatgaaaaactgttatttataataaaaaaactacctacacacagacatttgaaa 20443269  T
Q  272 ctataa 277  Q
    ||||||    
T  20443268 ctataa 20443263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 19272376 - 19272416
Alignment:
Q  168 gataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  19272376 gataatttgagtgtaagttttgtgtatgattggattgtgac 19272416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 492 - 542
Target Start/End: Complemental strand, 20437841 - 20437791
Alignment:
Q  492 aaactccattgactgcatttaatataacctgtcgaaaatgctggctaacaa 542  Q
    |||||| |||||||||||||||| || | ||||||||||| ||||||||||    
T  20437841 aaactctattgactgcatttaatttagcttgtcgaaaatgatggctaacaa 20437791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 20445925 - 20445818
Alignment:
Q  173 tttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttattat---agaaaactaactacacataaacattcga 269  Q
    |||||||||||||||||| ||||| || | |||||| |  ||| ||||||| |||||| ||||||| ||   | ||||||| ||||||| | ||||| ||    
T  20445925 tttgagtgtaagttttctatatgaatgtactgtgacctcttttccctatgaaaaactgttatttataataaaaaaaaactacctacacacagacatttga 20445826  T
Q  270 aactataa 277  Q
    ||||||||    
T  20445825 aactataa 20445818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 614 - 757
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgta-actcgtttctatctaaattcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||| ||| |||| | |||||| ||||||||| ||| ||||||||  |||  ||||  ||| | | |||||| |||||||||||||||| |||||    
T  614 tgcattgatcgaatgtaaatcggtacacagattcatacattgtgacttgtttactattttcactctgagtgcggatagtttgagtgtaagttttttgtat 713  T
Q  195 gattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    || ||||||||||| || ||| ||||||| |||||  |||||||    
T  714 gactgaattgtgacctgttttccctatgaaaaactactatttat 757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 490 - 544
Target Start/End: Original strand, 1006 - 1060
Alignment:
Q  490 tcaaactccattgactgcatttaatataacctgtcgaaaatgctggctaacaata 544  Q
    ||||||||||||||||||||||| ||||| ||||| ||||| | |||||||||||    
T  1006 tcaaactccattgactgcatttattataatctgtcaaaaatacaggctaacaata 1060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 7560 - 7450
Alignment:
Q  99 attgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtatgat 197  Q
    |||||||||| |||||||| |||| |  |||||| |||   |||||| |||||||||| |||   || ||||||||||||||||| ||||| ||||||||    
T  7560 attgattgaatgtaagttgatacacatgttcatacattgcaacttgtgactcgtttctctcttccatgcggataatttgagtgtatgttttttgtatgat 7461  T
Q  198 tgaattgtgac 208  Q
    |||||||||||    
T  7460 tgaattgtgac 7450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 14139 - 14248
Alignment:
Q  99 attgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtatgat 197  Q
    |||||||||| |||| |||||||| |  |||||| |||   |||||| |||||||||| |||   || ||||||||||||||||||||||| ||||||||    
T  14139 attgattgaatgtaaattggtacacatgttcatacattgcaacttgtgactcgtttctctcttccatgcggataatttgagtgtaagtttt-tgtatgat 14237  T
Q  198 tgaattgtgac 208  Q
    |||||||||||    
T  14238 tgaattgtgac 14248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 3692 - 3804
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||  |||||||| | ||||||| |||   |||| | |||||||||| |||   || ||||||||||||||||||||||| |||||    
T  3692 tgcattgattgaatgtagattggtacacatattcatacattgcaacttttgactcgtttctctcttccatgcggataatttgagtgtaagtttt-tgtat 3790  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  3791 gattgaattgtgac 3804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 101996 - 102108
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||  |||||||| | ||||||| |||   |||| | |||||||||| |||   || ||||||||||||||||||||||| |||||    
T  101996 tgcattgattgaatgtagattggtacacatattcatacattgcaacttttgactcgtttctctcttccatgcggataatttgagtgtaagtttt-tgtat 102094  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  102095 gattgaattgtgac 102108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 39920 - 39856
Alignment:
Q  174 ttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||| || |||||  |||||||    
T  39920 ttgagtgtaagttttttgtatgattgaattgtgacctgtttttcctaagaaaaactactatttat 39856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 44331 - 44395
Alignment:
Q  174 ttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||| || |||||  |||||||    
T  44331 ttgagtgtaagttttttgtatgattgaattgtgacctgtttttcctaagaaaaactcctatttat 44395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0480 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 3765 - 3723
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  3765 cggataatttgagtgtaagttttttgtatgatagaattgtgac 3723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 12394 - 12352
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    ||||||||||||||||||||||| ||||||||||| |||||||    
T  12394 cggataatttgagtgtaagttttttgtatgattgatttgtgac 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 250076 - 250186
Alignment:
Q  99 attgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtatgat 197  Q
    |||||||||| |||| |||||||| | ||||||| |||   |||||| ||||||||||  ||   ||  |||||||||||||||||||||| ||||||||    
T  250076 attgattgaatgtaaattggtacacaaattcatacattgcaacttgtgactcgtttctcgcttccatatggataatttgagtgtaagttttgtgtatgat 250175  T
Q  198 tgaattgtgac 208  Q
    || ||||||||    
T  250176 tggattgtgac 250186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 9124 - 9012
Alignment:
Q  96 tgcattgattgaacgtaagttggtacatagattcatagattttgacttgtaactcgtttctatctaa-attcggataatttgagtgtaagttttctgtat 194  Q
    ||||||||||||| |||  |||||||| | ||||||| |||   |||||| ||| |||||| |||   || |||||||||||| |||||||||| |||||    
T  9124 tgcattgattgaatgtagattggtacacatattcatacattgcaacttgtgacttgtttctctcttccatgcggataatttgaatgtaagtttt-tgtat 9026  T
Q  195 gattgaattgtgac 208  Q
    ||||||||||||||    
T  9025 gattgaattgtgac 9012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 70708 - 70667
Alignment:
Q  166 cggataatttgagtgtaagttttctgtatgattgaattgtga 207  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  70708 cggataatttgagtgtaagtattttgtatgattgaattgtga 70667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 200189 - 200149
Alignment:
Q  167 ggataatttgagtgtaagttttctgtatgattgaattgtgac 208  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  200189 ggataatttgagtgtaagtttt-tgtatgattgaattgtgac 200149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 8829 - 8893
Alignment:
Q  174 ttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||||||||  |||||||||||||||||| || |||||||| || |||||  |||||||    
T  8829 ttgagtgtaagtttttagtatgattgaattgtgacctgtttttcctaagaaaaactactatttat 8893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 58562 - 58498
Alignment:
Q  174 ttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||||||||  |||||||||||||||||| || |||||||| || |||||  |||||||    
T  58562 ttgagtgtaagtttttagtatgattgaattgtgacctgtttttcctaagaaaaactactatttat 58498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 390143 - 390079
Alignment:
Q  174 ttgagtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    |||||||||||||||  ||||||||||||||||||  | |||||||| || ||||| ||||||||    
T  390143 ttgagtgtaagttttgagtatgattgaattgtgacccgtttttcctaagaaaaactaatatttat 390079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0509 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: scaffold0509
Description:

Target: scaffold0509; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 1293 - 1354
Alignment:
Q  177 agtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    ||||||||||||  |||||||||||||||||| || |||||||| || |||||  |||||||    
T  1293 agtgtaagtttttagtatgattgaattgtgacctgtttttcctaagaaaaactactatttat 1354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0509; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 7721 - 7782
Alignment:
Q  177 agtgtaagttttctgtatgattgaattgtgacatgcttttcctatgagaaactgatatttat 238  Q
    ||||||||||||  |||||||||||||||||| || |||||||| || |||||  |||||||    
T  7721 agtgtaagtttttagtatgattgaattgtgacctgtttttcctaagaaaaactactatttat 7782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 6727 - 6760
Alignment:
Q  174 ttgagtgtaagttttctgtatgattgaattgtga 207  Q
    ||||||||||||||| ||||||||||||||||||    
T  6727 ttgagtgtaagttttttgtatgattgaattgtga 6760  T

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