View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_high_12 (Length: 459)
Name: NF0586_high_12
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 285
Target Start/End: Original strand, 32910717 - 32910970
Alignment:
| Q |
30 |
gtattcatatcaatcgttattctcttcaatacttacttcagtgtattatgttgtagataacacctggtttgagttcatatgcaaatgatccggaacatgc |
129 |
Q |
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| T |
32910717 |
gtattcatatcaatcgttattctcttcaatacttacttcagtgtattatgttgtagataacacctggtttgagttcatatgcaaatgatccggaacaagc |
32910816 |
T |
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| Q |
130 |
tgcaaaatctttgattccacttctacaacaagcagaaaatgtggtccctattgatctacatcacaagacacccatcagacttggggtgggttttttcttt |
229 |
Q |
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| T |
32910817 |
tgcaaaatctttgattccacttctacaacaagcagaaaatgtggtccctattgatctacatcacaagacaccgatcagacttggggtaggttttttcttt |
32910916 |
T |
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| Q |
230 |
gatttagtgcagtcacaaattcatagattcacgccgtaatcacattgatgatcgtt |
285 |
Q |
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| T |
32910917 |
gatttggtgcagtcacaa--tcatagattcacgccgtaatcacattgatgatcgtt |
32910970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 359 - 444
Target Start/End: Original strand, 32911037 - 32911122
Alignment:
| Q |
359 |
tgtctgatcttgttccaacaatcattgatttgttgactatgcaaatgtgcgannnnnnnnnngtatgttaaccctcgcttctcaag |
444 |
Q |
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| T |
32911037 |
tgtctgatcttgttccaacaatcattgatttgttgactacgcaaatgtgcaattttttttttgtatgttaaccctcgcttctcaag |
32911122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 32922283 - 32922355
Alignment:
| Q |
95 |
ggtttgagttcatatgcaaatgatccggaacatgctgcaaaatctttgattccacttctacaacaagcagaaa |
167 |
Q |
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| T |
32922283 |
ggtttgagtgcatacgcggataatccagaagaagctgcaaaatctttgattccacttttagagcaagcagaaa |
32922355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 11822503 - 11822589
Alignment:
| Q |
88 |
aacacctggtttgagttcatatgcaaatgatccggaacatgctgcaaaatctttgattccacttctacaacaagcagaaaatgtggt |
174 |
Q |
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| T |
11822503 |
aacacccggtttgagtgcatacgcggataatccagaacaagctgcaaaatctttgattccacttttagagcaagcagaaagtgtggt |
11822589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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