View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0586_high_14 (Length: 458)
Name: NF0586_high_14
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_high_14 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 83 - 458
Target Start/End: Original strand, 26721764 - 26722139
Alignment:
| Q |
83 |
gctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnctca |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
26721764 |
gctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaaaaacaaactcacttttttttatctca |
26721863 |
T |
|
| Q |
183 |
ttctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaa |
282 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26721864 |
ttctcttcttacttttaatttcattttattctgtaataatgataacgagattgtttctatctacactttataggttctacaaatatggttcaaagaagaa |
26721963 |
T |
|
| Q |
283 |
aaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721964 |
aaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaa |
26722063 |
T |
|
| Q |
383 |
gacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
458 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722064 |
gacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
26722139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 83 - 458
Target Start/End: Complemental strand, 45117145 - 45116783
Alignment:
| Q |
83 |
gctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnctca |
182 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||| |
|
|
| T |
45117145 |
gctgccatcctttcaaggaatgtaagaggctcatcactctctttttaagagcatgctcccaaagtgattgggaacatcaaattcacttttttttatctca |
45117046 |
T |
|
| Q |
183 |
ttctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaa |
282 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45117045 |
ttctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaa |
45116946 |
T |
|
| Q |
283 |
aaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaa |
382 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45116945 |
aaaccatgagccttggattatgatttgag-------------aaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaa |
45116859 |
T |
|
| Q |
383 |
gacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
458 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45116858 |
gacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
45116783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 83 - 458
Target Start/End: Original strand, 2987232 - 2987595
Alignment:
| Q |
83 |
gctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnn-ctc |
181 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
2987232 |
gctgccatcctttcaaggaatgtaagaggcttatcactctctttttaagagcatgttcccaaagtgattgggaacatcaaattcactttttttttatctc |
2987331 |
T |
|
| Q |
182 |
attctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaaga |
281 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2987332 |
attctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctatactttataggttctgcaaatatggttcaaagaaga |
2987431 |
T |
|
| Q |
282 |
aaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaa |
381 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2987432 |
aaaaccatgagccttggattatgattt-------------gagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaa |
2987518 |
T |
|
| Q |
382 |
agacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
458 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2987519 |
agacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
2987595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1410 times since January 2019
Visitors: 3846