View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_high_16 (Length: 451)
Name: NF0586_high_16
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 30 - 438
Target Start/End: Complemental strand, 47537362 - 47536954
Alignment:
| Q |
30 |
gatagcaatggtccataatatatataacgtagaatgatatatgacacnnnnnnngccatacctgttggctaaaatatacgactgtgtatgataacgattt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47537362 |
gatagcaatggtccataatatatataacgtagaatgatatatgacacaaaaaaaggcatacctgttggctaaaatatacgactgtgtatgataacgattt |
47537263 |
T |
|
| Q |
130 |
acgagtagtcagcaaattctgcattgcaatagtatacaactttgatgctttacaatatggagttcaacgagtgaaaatcgacatccctaatagcgttttg |
229 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47537262 |
acgagtagtcaacaaattctgcattgcaatagtatacaactttgatgctttacaatatggagttcaacgagagaaaatcgacatccctaatagcgttttg |
47537163 |
T |
|
| Q |
230 |
agatgctagacattgtgtacttatgcttgcggtcatggaacagcctcaatacaactgctgcagtttcttctatcgctttagcagtcacatctgtatatat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47537162 |
agatgctagacattgtgtacttatgcttgcggtcatggaacagcctcaatacaactgctgcagtttcttctatcgctttagcagtcacatctgtatatat |
47537063 |
T |
|
| Q |
330 |
tagtgaaaaaatttagaatccatcagcattagtttgaatgtaatattttgcaacaccctttgaactaatcaaaatcacagtttgaataataaaaatttga |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47537062 |
tagtgaaaaaatttagaatccatcagcattagtttgaatgtaatattttgcaacaccctttgaactaatcaaaatcacagtttgaataataaaaatttga |
47536963 |
T |
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| Q |
430 |
aatcgagta |
438 |
Q |
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||||||||| |
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| T |
47536962 |
aatcgagta |
47536954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 2821887 - 2821816
Alignment:
| Q |
360 |
agtttgaatgtaatattttgcaacaccctttgaactaatcaaaatcacagtttgaataataaaaatttgaaat |
432 |
Q |
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|||||||| ||||||||||||||| | |||||| |||| |||||||| ||||||||||| |||| |||||| |
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| T |
2821887 |
agtttgaaagtaatattttgcaactct-tttgaaacaatctaaatcacattttgaataatagaaatgtgaaat |
2821816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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