View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_high_18 (Length: 408)
Name: NF0586_high_18
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 379
Target Start/End: Complemental strand, 182503 - 182161
Alignment:
| Q |
30 |
gtcacctccttactcatctctctagagttgtttttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttttttc |
129 |
Q |
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| T |
182503 |
gtcacctccttactcatctctctagagttgtttttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttgtttc |
182404 |
T |
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| Q |
130 |
tttcttcttctacctatatggaaagtaagtgtggttaatgttaatatttatggtcaaaaaccaagttgcatattatattaataataataaatttaaaatt |
229 |
Q |
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| T |
182403 |
tttcttcttctacctatatggaaagtaagtgtggttaatgttaatatttatggtcaaaaaccaagttgcatat--------taataataaatttaaaatt |
182312 |
T |
|
| Q |
230 |
gtgcttctgcacacagaatgagaatgacagaattgaagagtgtgttgtttgttagttagttgtaatattcaattaatcacgtaccattaaatcattgttc |
329 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182311 |
gtgcttctgcacacagaatgaggatgacagaattgaagagtgtgttgtttgttagttagttgtaatattcaattaatcacgtaccattaaatcattgttg |
182212 |
T |
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| Q |
330 |
tcgacatcaatcata-tttgtacacttcatatttttcaatattcaatcaac |
379 |
Q |
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| T |
182211 |
tcgacatcaatgatattttgtacacttcatatttttcaatattcaatcaac |
182161 |
T |
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