View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0586_high_26 (Length: 335)

Name: NF0586_high_26
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0586_high_26
NF0586_high_26
[»] chr7 (2 HSPs)
chr7 (7-335)||(946128-946456)
chr7 (235-283)||(28145718-28145766)
[»] chr8 (9 HSPs)
chr8 (7-110)||(2517322-2517425)
chr8 (7-96)||(2431716-2431805)
chr8 (7-89)||(1459039-1459121)
chr8 (7-89)||(2428746-2428828)
chr8 (7-89)||(2435113-2435195)
chr8 (17-89)||(2506359-2506431)
chr8 (7-110)||(2512962-2513065)
chr8 (31-88)||(2497646-2497703)
chr8 (226-282)||(6873616-6873672)
[»] scaffold1626 (1 HSPs)
scaffold1626 (213-282)||(320-387)
[»] chr3 (1 HSPs)
chr3 (246-284)||(3028559-3028597)
[»] chr1 (3 HSPs)
chr1 (213-282)||(409390-409457)
chr1 (225-260)||(43017041-43017076)
chr1 (244-282)||(427221-427259)
[»] chr2 (1 HSPs)
chr2 (245-282)||(26533840-26533877)
[»] chr5 (1 HSPs)
chr5 (227-275)||(31951915-31951963)
[»] scaffold0312 (1 HSPs)
scaffold0312 (244-282)||(3291-3329)
[»] chr6 (1 HSPs)
chr6 (248-286)||(20796473-20796511)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 7 - 335
Target Start/End: Original strand, 946128 - 946456
Alignment:
Q  7 tccaacaatatagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaacatattctccacttttggga 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  946128 tccaacaacatagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaacatattctccacttttggga 946227  T
Q  107 gagcacacctcataaaatccagcatatgccgtaaatcccggcattcctataaattaaaacggattaattaatgagggttgagtaactcaactgatttgaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  946228 gagcacacctcataaaatccagcatatgccgtaaatcccggcattcctataaattaaaacggattaattaatgagggttgagtaactcaactgatttgaa 946327  T
Q  207 cgaaaggttaaaggaccacggttcaaactctggtaaaagagaaaatactaacatgacaactaatatactaacatttccctatnnnnnnncagattaatta 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||    
T  946328 cgaaaggttaaaggaccacggttcaaactctggtaaaagagaaaatactaacatgagaactaatatactaacatttccctataaaaaaacagattaatta 946427  T
Q  307 tttatcaaattaatgtgaagagaagtatt 335  Q
    |||||||||||||||||||||||||||||    
T  946428 tttatcaaattaatgtgaagagaagtatt 946456  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 28145766 - 28145718
Alignment:
Q  235 tctggtaaaagagaaaatactaacatgacaactaatatactaacatttc 283  Q
    |||||| || ||||||||||||| ||  |||||||||||||||||||||    
T  28145766 tctggtgaatgagaaaatactaatatagcaactaatatactaacatttc 28145718  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 2517322 - 2517425
Alignment:
Q  7 tccaacaatatagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaacatattctccacttttggga 106  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||| || ||||| || || ||||||||||||||||  |||||  |||| |||    
T  2517322 tccaacaacatagcaaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgaaacaaaaacattctctccttttttcgga 2517421  T
Q  107 gagc 110  Q
    ||||    
T  2517422 gagc 2517425  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 2431805 - 2431716
Alignment:
Q  7 tccaacaatatagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaacatattctcc 96  Q
    |||||||| ||| |||||||||||||| |||| ||| |||||||||||||| |||||||  ||||| ||||||||| |||||| ||||||    
T  2431805 tccaacaacataacaaccatgcaattttgcaaattggccaacaagttgaccaacagcactggatgccgctgaaacataaacattttctcc 2431716  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 1459121 - 1459039
Alignment:
Q  7 tccaacaatatagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaacat 89  Q
    |||||| | ||||||||||||||||||||| | ||| |||||||||||||| || ||||| || || ||||||||||||||||    
T  1459121 tccaacgacatagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacat 1459039  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 2428828 - 2428746
Alignment:
Q  7 tccaacaatatagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaacat 89  Q
    |||||| | ||||||||||||||||||||| | ||| |||||||||||||| || ||||| || || ||||||||||||||||    
T  2428828 tccaacgacatagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacat 2428746  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 2435195 - 2435113
Alignment:
Q  7 tccaacaatatagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaacat 89  Q
    |||||||| ||| |||||||||| ||| |||| |||||| ||||||||||| |||||||| ||||| ||||||||| ||||||    
T  2435195 tccaacaacataacaaccatgcagttttgcaaattgacctacaagttgaccaacagcaccggatgcagctgaaacataaacat 2435113  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 2506359 - 2506431
Alignment:
Q  17 tagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaacat 89  Q
    |||||||||||||||||||| | ||| |||||||||||||| || ||||| || || ||||||||||||||||    
T  2506359 tagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacat 2506431  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 2512962 - 2513065
Alignment:
Q  7 tccaacaatatagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaacatattctccacttttggga 106  Q
    |||||| | ||||||||||||||||||||| | ||| |||||||||||||| || || || || || ||||||||||||||||  |||||  | ||||||    
T  2512962 tccaacgacatagcaaccatgcaatttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttggga 2513061  T
Q  107 gagc 110  Q
    ||||    
T  2513062 gagc 2513065  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 2497646 - 2497703
Alignment:
Q  31 tttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaaca 88  Q
    |||||| | |||||||||||||||||| || ||||| || || |||||||||||||||    
T  2497646 tttagcgaattgaccaacaagttgaccgactgcaccagaggcagctgaaacaaaaaca 2497703  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 6873616 - 6873672
Alignment:
Q  226 ggttcaaactctggtaaaagagaaaatactaacatgacaactaatatactaacattt 282  Q
    |||| |||||| |||||| ||| |||||||||| | |||||||||||||||| ||||    
T  6873616 ggttaaaactcaggtaaaggaggaaatactaacgtaacaactaatatactaatattt 6873672  T

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Target: scaffold1626 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1626
Description:

Target: scaffold1626; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 387 - 320
Alignment:
Q  213 gttaaaggaccacggttcaaactctggtaaaagagaaaatactaacatgacaactaatatactaacattt 282  Q
    |||||||||||  ||||||||||| ||  | ||||||||||||||||| |||||| ||||||||||||||    
T  387 gttaaaggacc--ggttcaaactcaggctacagagaaaatactaacattacaactcatatactaacattt 320  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 3028597 - 3028559
Alignment:
Q  246 agaaaatactaacatgacaactaatatactaacatttcc 284  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  3028597 agaaaatactaacataacaactaatatactaacatttcc 3028559  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 409390 - 409457
Alignment:
Q  213 gttaaaggaccacggttcaaactctggtaaaagagaaaatactaacatgacaactaatatactaacattt 282  Q
    |||||||||||  ||||||||||| ||  | ||||||||||||||||| |||||| ||||||||||||||    
T  409390 gttaaaggacc--ggttcaaactcaggctacagagaaaatactaacattacaactcatatactaacattt 409457  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 43017076 - 43017041
Alignment:
Q  225 cggttcaaactctggtaaaagagaaaatactaacat 260  Q
    |||||||||| |||||||||||||||||||||||||    
T  43017076 cggttcaaaccctggtaaaagagaaaatactaacat 43017041  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 427221 - 427259
Alignment:
Q  244 agagaaaatactaacatgacaactaatatactaacattt 282  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  427221 agagaaaatactaacataacaactaatataccaacattt 427259  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 26533840 - 26533877
Alignment:
Q  245 gagaaaatactaacatgacaactaatatactaacattt 282  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26533840 gagaaaatactaacataacaactaatatactaacattt 26533877  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 31951915 - 31951963
Alignment:
Q  227 gttcaaactctggtaaaagagaaaatactaacatgacaactaatatact 275  Q
    |||||||| || || ||||||||||||||||||| ||||||||||||||    
T  31951915 gttcaaaccctagtgaaagagaaaatactaacataacaactaatatact 31951963  T

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Target: scaffold0312 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 3329 - 3291
Alignment:
Q  244 agagaaaatactaacatgacaactaatatactaacattt 282  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  3329 agagaaaatactaacataacaactaatataccaacattt 3291  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 20796511 - 20796473
Alignment:
Q  248 aaaatactaacatgacaactaatatactaacatttccct 286  Q
    |||||||||| || |||||||||||||||||||||||||    
T  20796511 aaaatactaatataacaactaatatactaacatttccct 20796473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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