View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0586_high_34 (Length: 307)

Name: NF0586_high_34
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0586_high_34
NF0586_high_34
[»] chr5 (2 HSPs)
chr5 (1-301)||(20810131-20810431)
chr5 (1-301)||(20836486-20836786)
[»] chr8 (2 HSPs)
chr8 (1-296)||(31173880-31174175)
chr8 (3-301)||(3400375-3400673)
[»] chr7 (1 HSPs)
chr7 (1-289)||(8373480-8373768)
[»] chr3 (1 HSPs)
chr3 (256-296)||(32412971-32413011)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 20810431 - 20810131
Alignment:
Q  1 gcttttaattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||    
T  20810431 gcttttaattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttatttttccccaatgcaacaccat 20810332  T
Q  101 gaatcttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaac 200  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20810331 gaatcttctgctttatttcaaagagatctaaaagaagttgtttttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaac 20810232  T
Q  201 gaaacttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctatgata 300  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20810231 gaaacttgttctaccctggaatctacgatggatttgattgtagagagctttggccgtggttgttttgcctgatccacccattccccatatccctatgata 20810132  T
Q  301 c 301  Q
    |    
T  20810131 c 20810131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 20836786 - 20836486
Alignment:
Q  1 gcttttaattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||| ||| |    
T  20836786 gcttttaattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtcgctggagtcttgtcatgattttagttttccccaatgcaatactgt 20836687  T
Q  101 gaatcttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaac 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||     
T  20836686 gaatcttctgttttatttcaaggagatctaaaagaagttgttcttgtaaagtaataacccctccactattattatcacaaacttctctaatactttcaag 20836587  T
Q  201 gaaacttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctatgata 300  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  20836586 gaaacttgttctaccctggaatctacgatggatttgattgtagagagctttggccgtggttgttttgcctaatccacccattccccatatccctatgata 20836487  T
Q  301 c 301  Q
    |    
T  20836486 c 20836486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 31174175 - 31173880
Alignment:
Q  1 gcttttaattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactat 100  Q
    |||||||||||||| |   |||||||||||||||||||||  ||| ||||||||||  |||||||| ||   || |||||  ||||| || |||  ||||    
T  31174175 gcttttaattgctcgggtgtggtcacatcatcgagtacgatgaaagccttttgtcctcgaagtcttttctctatcttagtcatccccaatgcaatgctat 31174076  T
Q  101 gaatcttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaac 200  Q
    ||||||  || |||||||  |||||||||||||||||||||| |||||||  |||| ||||||||  |||||||||||||||||||| |||||||||||     
T  31174075 gaatctcttgttttatttgcaggagatctaaaagaagttgttgttgtaaatgaataacccctctagaattattatcacaaacttctcgaatactttcaaa 31173976  T
Q  201 gaaacttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctat 296  Q
    ||||||||| |||||||  || ||||||||||||| |||||||| | ||||||  ||||||||||| || ||||||||||||||||||||||||||    
T  31173975 gaaacttgttctaccttcaaacctacgatggattttattgtagatagctttggctgtggttgttttcccggatccacccattccccatatccctat 31173880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 301
Target Start/End: Original strand, 3400375 - 3400673
Alignment:
Q  3 ttttaattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactatga 102  Q
    |||||||||||||||  ||||||||||||| |||| ||| |||||  |||||||  |||||||| ||   || |||||| ||||  |  |||  ||||||    
T  3400375 ttttaattgctcagatgtggtcacatcatcaagtatgacaaaaactgtttgtcctcgaagtcttttctcaatcttagttatccctgaggcaatgctatga 3400474  T
Q  103 atcttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacga 202  Q
    ||||  || |||||||  | |||||||||||||||||||| |||||||| |||| |||||||| ||||||||||||||||||||| ||||||||| | ||    
T  3400475 atctcttgttttattttcaagagatctaaaagaagttgttgttgtaaaggaataacccctctattattattatcacaaacttctcgaatactttcgatga 3400574  T
Q  203 aacttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctatgatac 301  Q
    ||||||  ||||| |  ||||||  | ||||||||||||||| | |||||| |||||||||||| || |||||||||||||||||||||||||| ||||    
T  3400575 aacttgctctacccttaaatctagaacggatttgattgtagatagctttggccgtggttgttttcccggatccacccattccccatatccctatcatac 3400673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 8373480 - 8373768
Alignment:
Q  1 gcttttaattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactat 100  Q
    |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||| ||  ||| ||| || |||||  | |||  ||||    
T  8373480 gcttttaattgctcagacttggtcacatcatcaagtacgattaaaaccttttgtccctgaagtcttttctcgatcttatttatccccactgcaatgctat 8373579  T
Q  101 gaatcttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaac 200  Q
    | ||||| |  ||| |||  ||||||||| ||||||||||||| ||||||  ||||  |||| | ||||||| |||||||||||||| |||||||||||     
T  8373580 gtatcttatcttttgtttttaggagatctgaaagaagttgttcctgtaaatgaataatcccttttctattataatcacaaacttctcgaatactttcaat 8373679  T
Q  201 gaaacttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccata 289  Q
    |||||||||  |||| ||||||  |||||||||| ||||||||| | |||||| |  ||| ||||| || |||||||||||||||||||    
T  8373680 gaaacttgttttaccctggaattcacgatggattcgattgtagatagctttggccaaggtagttttcccggatccacccattccccata 8373768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 32412971 - 32413011
Alignment:
Q  256 gtggttgttttgcctgatccacccattccccatatccctat 296  Q
    ||||||||||| |||||||| ||||||||||| ||||||||    
T  32412971 gtggttgttttacctgatccccccattccccaaatccctat 32413011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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