View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0586_high_39 (Length: 272)

Name: NF0586_high_39
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0586_high_39
NF0586_high_39
[»] chr8 (8 HSPs)
chr8 (9-244)||(33168231-33168466)
chr8 (2-244)||(17315224-17315466)
chr8 (2-244)||(17337135-17337377)
chr8 (75-210)||(13539710-13539845)
chr8 (75-210)||(13684629-13684764)
chr8 (17-159)||(12521301-12521439)
chr8 (15-200)||(27933159-27933343)
chr8 (48-121)||(9798390-9798462)
[»] chr3 (13 HSPs)
chr3 (7-202)||(12881037-12881234)
chr3 (14-244)||(31139299-31139518)
chr3 (17-225)||(6013933-6014143)
chr3 (33-203)||(4863818-4863996)
chr3 (38-221)||(11271414-11271596)
chr3 (6-128)||(6020263-6020385)
chr3 (156-209)||(8890630-8890683)
chr3 (174-229)||(4847019-4847074)
chr3 (17-92)||(6018132-6018207)
chr3 (48-119)||(13833019-13833089)
chr3 (173-221)||(4284996-4285044)
chr3 (206-244)||(8890730-8890768)
chr3 (169-225)||(6018286-6018342)
[»] chr2 (5 HSPs)
chr2 (1-214)||(8172789-8173001)
chr2 (38-244)||(24185203-24185409)
chr2 (65-159)||(16917812-16917904)
chr2 (57-148)||(31603483-31603575)
chr2 (57-156)||(21511811-21511910)
[»] chr6 (1 HSPs)
chr6 (23-210)||(28973920-28974107)
[»] chr4 (6 HSPs)
chr4 (39-244)||(15154457-15154662)
chr4 (21-235)||(31371615-31371833)
chr4 (57-221)||(10520324-10520488)
chr4 (52-215)||(15048073-15048236)
chr4 (52-215)||(15106188-15106351)
chr4 (173-216)||(53000317-53000360)
[»] chr1 (6 HSPs)
chr1 (17-210)||(15918013-15918206)
chr1 (16-244)||(28553360-28553591)
chr1 (27-244)||(37627433-37627645)
chr1 (9-160)||(12788678-12788829)
chr1 (22-116)||(45962741-45962834)
chr1 (45-148)||(8236350-8236453)
[»] chr7 (5 HSPs)
chr7 (8-244)||(10234630-10234869)
chr7 (58-244)||(9046272-9046459)
chr7 (173-238)||(23395001-23395066)
chr7 (38-121)||(6847746-6847828)
chr7 (56-109)||(14545537-14545590)
[»] chr5 (2 HSPs)
chr5 (46-184)||(12685682-12685817)
chr5 (40-244)||(26266452-26266657)
[»] scaffold0003 (1 HSPs)
scaffold0003 (7-123)||(356806-356928)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 33168466 - 33168231
Alignment:
Q  9 tcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttgg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33168466 tcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctcgtgattgttgg 33168367  T
Q  109 aataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33168366 aataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaa 33168267  T
Q  209 atatcaaatgaagaaccgagaagtgaagttagatat 244  Q
    |||||||| |||||||||||||||||||||||||||    
T  33168266 atatcaaacgaagaaccgagaagtgaagttagatat 33168231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 17315466 - 17315224
Alignment:
Q  2 ttttcagtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtga 101  Q
    |||||||| || |||||| ||| ||||   ||||| || |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| | ||    
T  17315466 ttttcagttatttattttcatgcctttatatttcatgtatttatattttaatcccttgtctactatgatcatgagtgagtaaactattctagtcttgaga 17315367  T
Q  102 ttgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaatttt 201  Q
    |||||| | ||||| |||||||||||| || |||||| || | || ||||||||||||   ||| | |||  ||||||||||||||  || ||||  ||     
T  17315366 ttgttgaactaatcaaatgattgaatcctactcaacccaaatttagaatctattttattttaattctttttataatctaatctcatcatttttaagctta 17315267  T
Q  202 ataacaaatatcaaatgaagaaccgagaagtgaagttagatat 244  Q
    ||||||||||||||| |||| || || | |||||||| |||||    
T  17315266 ataacaaatatcaaacgaaggactgaaaggtgaagtttgatat 17315224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 17337377 - 17337135
Alignment:
Q  2 ttttcagtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtga 101  Q
    |||||||| || |||||| ||| ||||   ||||| || |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| | ||    
T  17337377 ttttcagttatttattttcatgcctttatatttcatgtatttatattttaatcccttgtctactatgatcatgagtgagtaaactattctagtcttgaga 17337278  T
Q  102 ttgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaatttt 201  Q
    |||||| | ||||| |||||||||||| || |||||| || | || ||||||||||||   ||| | |||  ||||||| ||||||  || ||||  ||     
T  17337277 ttgttgaactaatcaaatgattgaatcctactcaacccaaatttagaatctattttattttaattcttttaataatctactctcatcatttttaagctta 17337178  T
Q  202 ataacaaatatcaaatgaagaaccgagaagtgaagttagatat 244  Q
    ||||||||||||||| |||| ||||| | |||||||| |||||    
T  17337177 ataacaaatatcaaacgaaggaccgaaatgtgaagtttgatat 17337135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 210
Target Start/End: Complemental strand, 13539845 - 13539710
Alignment:
Q  75 agtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcct 174  Q
    |||||||| | || || ||||| | |||| |||||||||||||||||||||||| || |||||  |||| || | | |||||||| | ||| | ||| ||    
T  13539845 agtgagtagatttatccagtcttgagattattggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttct 13539746  T
Q  175 aatctaatctcattgttgttaaattttataacaaat 210  Q
    |||||| |||||| |||||| |||||||||||||||    
T  13539745 aatctactctcatcgttgtttaattttataacaaat 13539710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 13684629 - 13684764
Alignment:
Q  75 agtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcct 174  Q
    |||||||| | || || ||||| | |||| |||||||||||||||||||||||| || |||||  |||| || | | |||||||| | ||| | ||| ||    
T  13684629 agtgagtagatttatccagtcttgagattattggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttct 13684728  T
Q  175 aatctaatctcattgttgttaaattttataacaaat 210  Q
    |||||| |||||| |||||| |||||||||||||||    
T  13684729 aatctactctcatcgttgtttaattttataacaaat 13684764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 12521301 - 12521439
Alignment:
Q  17 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 116  Q
    ||||||||| |||||||||| |||||||| || |||||  |||| || |||||||||  ||||||  |||||||    |||||| ||||||||||||| |    
T  12521301 ttttatgtcatttactttcatgtctttatcttataatcctttgtatattatgatcatgtgtgagtggacttttc----ctagtg-ttgttggaataattt 12521395  T
Q  117 aatgattgaatcataatcaa-cctaagtctaaaatctattttat 159  Q
    |||||| || || ||||||| || ||||||| ||||||||||||    
T  12521396 aatgatggagtcctaatcaatcccaagtctagaatctattttat 12521439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 27933159 - 27933343
Alignment:
Q  15 atttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataat 114  Q
    ||||||||| ||| || ||||| |||| | || ||||||| ||||||||| ||||| || ||||| || ||||||||| | |   |||||||| ||||||    
T  27933159 atttttatg-cttctattttcatgtctctttactttaatcccttgtctacaatgatgatgagtgaatatacttttctacttttaggattgttgaaataat 27933257  T
Q  115 ctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattt 200  Q
    ||| |||||||||| || |||| | |||| || | ||||||||||| |||    ||| |||||||| |||||||||  ||||||||    
T  27933258 ctattgattgaatcctattcaaaccaagtttagactctattttatatgaaattgttttctaatctattctcattgtctttaaattt 27933343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 9798462 - 9798390
Alignment:
Q  48 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatga 121  Q
    |||||||| ||||||||||| |||||||| ||||| ||  ||||||||| | |||||| |||||| ||||||||    
T  9798462 tttaatcttttgtctactataatcattagagagtagac-cttctagtcttgggattgtcggaatagtctaatga 9798390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 12881037 - 12881234
Alignment:
Q  7 agtcatctatttttatgtcttttactttcaagtctttata--ttttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattg 104  Q
    |||||| || ||||||| |||||||||||| |||||||||  |||||||| ||||||||||||||||||  ||||||| ||||||||  ||| | |||||    
T  12881037 agtcatttacttttatgccttttactttcatgtctttatatattttaatcccttgtctactatgatcatgggtgagtagacttttcttatcttgggattg 12881136  T
Q  105 ttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaatttta 202  Q
    | |||||||| ||||||||||||| ||||||||| || | || |||||||||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  12881137 taggaataatttaatgattgaatcttaatcaacccaaatttagaatctattttataagaatccattttctaatataatctcatcattgttaaatttta 12881234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 31139518 - 31139299
Alignment:
Q  14 tatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataa 113  Q
    |||||||||| |||||| |||||  |||||| |||||||||  ||||||||| | ||||| |||||||| |||||| ||||||         ||||||||    
T  31139518 tatttttatgccttttattttcatatctttacattttaatcctttgtctacttttatcatgagtgagtagacttttatagtct---------tggaataa 31139428  T
Q  114 tctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatc 213  Q
    | |||||||||||||||| | |||| |||| |||||| |  ||||||| ||  ||||| ||||| |||| ||||||||||||||| ||||||||||||||    
T  31139427 tttaatgattgaatcatatttaacccaagtataaaatgt--tttataaaaaatcattttctaatataatttcattgttgttaaatattataacaaatatc 31139330  T
Q  214 aaatgaagaaccgagaagtgaagttagatat 244  Q
    ||| |||||| ||||| ||||| || |||||    
T  31139329 aaacgaagaatcgagatgtgaactttgatat 31139299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 6013933 - 6014143
Alignment:
Q  17 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 116  Q
    |||||||| |||||||||||   ||||||| ||||||||||||||||||||||| || ||||||| |||| ||||| ||| | |||||| || ||||||     
T  6013933 ttttatgtgttttactttcattcctttataatttaatctcttgtctactatgattatgagtgagtgaactcttctattcttgggattgtggggataatca 6014032  T
Q  117 aatgattgaat-cat-aatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatca 214  Q
    ||| ||| ||| |||  || |||| ||||||| | |||||||| || |||    ||| |||||||| |||||||||| |||||||| ||| | ||||| |    
T  6014033 aataatttaatccatgtataaacccaagtctagactctattttctatgaaattgtttgctaatctattctcattgtttttaaatttaatatctaatatta 6014132  T
Q  215 aatgaagaacc 225  Q
    |||||||||||    
T  6014133 aatgaagaacc 6014143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 203
Target Start/End: Original strand, 4863818 - 4863996
Alignment:
Q  33 ttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaac----ttttctagtctagtgattgttggaataatc----taatgattg 124  Q
    |||| ||||||||||||||||| | |||||| |||||||||  || |||||||    | ||||||||| |  |||||| ||||||||    |||||||||    
T  4863818 ttcatgtctttatattttaatcacatgtctattatgatcatatgttagtaaacaaactattctagtcttggaattgttagaataatcaatctaatgattg 4863917  T
Q  125 aatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttat 203  Q
    |||  ||||||||| ||||||| | ||||||||||||||||||||||  ||||||||| |||| |||  ||||||||||    
T  4863918 aatgttaatcaacccaagtctagactctattttataagaatccattttataatctaatatcatcgttactaaattttat 4863996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 11271414 - 11271596
Alignment:
Q  38 gtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaac 137  Q
    ||||||||| |||| |  |||||||||||||||||| |||||||| ||||| |||||||   | |||||||| |||| |||||||||| || || |||||    
T  11271414 gtctttatactttagtgccttgtctactatgatcatgagtgagtagacttt-ctagtcttaggtttgttggactaatataatgattgactcctattcaac 11271512  T
Q  138 ctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 221  Q
      ||||||| ||||||||||||   ||| | ||| |||||||||||||||  || ||||  || ||||||||||||||| ||||    
T  11271513 tgaagtctagaatctattttatttaaattctttttctaatctaatctcatcatttttaagcttaataacaaatatcaaacgaag 11271596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 6020263 - 6020385
Alignment:
Q  6 cagtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgt 105  Q
    ||||||| || |||||||| ||||| ||||| | ||||||| |||||||| || |||||||||||||| |||||||||| | ||||| ||| | ||||||    
T  6020263 cagtcatttacttttatgtgttttaatttcatgcctttataatttaatctattctctactatgatcatgagtgagtaaattcttctattcttgggattgt 6020362  T
Q  106 tggaataatctaatgattgaatc 128  Q
     || |||||| ||| ||| ||||    
T  6020363 agggataatcaaataatttaatc 6020385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 8890630 - 8890683
Alignment:
Q  156 ttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaa 209  Q
    |||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  8890630 ttataaaaattcattttctaatctaatctcatcgttgttaaattttataacaaa 8890683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 4847019 - 4847074
Alignment:
Q  174 taatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgaga 229  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||| ||||||||||||    
T  4847019 taatctaatatcattgttattaaattttatagcaagtatcaaacgaagaaccgaga 4847074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 6018132 - 6018207
Alignment:
Q  17 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttcta 92  Q
    |||||||| |||||||||||   ||||||| |||||| | |||||||||||||| || |||||||||||| |||||    
T  6018132 ttttatgtgttttactttcattcctttataatttaatatattgtctactatgattatgagtgagtaaactcttcta 6018207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 13833089 - 13833019
Alignment:
Q  48 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaat 119  Q
    |||||||| ||||||||||||||||| |||||||| || ||| |||| | ||||||||||||||| ||||||    
T  13833089 tttaatcttttgtctactatgatcatgagtgagtagaccttt-tagttttgtgattgttggaatagtctaat 13833019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 4284996 - 4285044
Alignment:
Q  173 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 221  Q
    ||||||||||||||||||| ||||||||||||  |||||| ||||||||    
T  4284996 ctaatctaatctcattgttattaaattttatataaaatattaaatgaag 4285044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 8890730 - 8890768
Alignment:
Q  206 caaatatcaaatgaagaaccgagaagtgaagttagatat 244  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  8890730 caaatatcaaacgaagaaccgagaagtgaagtttgatat 8890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 6018286 - 6018342
Alignment:
Q  169 tttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaacc 225  Q
    ||| |||||||| |||||||||| |||||||| ||| | ||||| ||||||||||||    
T  6018286 tttgctaatctattctcattgtttttaaatttaatatctaatattaaatgaagaacc 6018342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8173001 - 8172789
Alignment:
Q  1 cttttcagtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtg 100  Q
    |||||||||  | ||| ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||  || | |  |||||| ||||||   |    
T  8173001 cttttcagttgtttatctttatgtcttttactttcatgtgtttatattttaatctcttgtctgctatgatcatgtgtaaattgacttttttagtctttgg 8172902  T
Q  101 attgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattt 200  Q
    |||||| |||||||||||||||| |||||||||||||  ||||||||| ||||||||||| |||| ||||| ||||| |||||||| |||||||||| ||    
T  8172901 attgttagaataatctaatgattaaatcataatcaactcaagtctaaactctattttataggaattcattttctaatataatctcagtgttgttaaa-tt 8172803  T
Q  201 tataacaaatatca 214  Q
    | ||||||||||||    
T  8172802 tgtaacaaatatca 8172789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 38 - 244
Target Start/End: Complemental strand, 24185409 - 24185203
Alignment:
Q  38 gtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaac 137  Q
    ||||||| |||||||||  ||||||||||||||||| |||||||| ||||||||||||| | ||||| |||||||||||||||||| |||  ||  ||||    
T  24185409 gtctttacattttaatccattgtctactatgatcataagtgagtagacttttctagtcttgagattgatggaataatctaatgatttaattctatccaac 24185310  T
Q  138 ctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagt 237  Q
    | |||||||  |  | ||| |||| |   ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||   ||| |||||||    
T  24185309 ccaagtctaggacatgtttgataaaagatcattttctaatctaatctcatcgttgttaaattttataacaaatatcaaacgaagaatttagatgtgaagt 24185210  T
Q  238 tagatat 244  Q
    | |||||    
T  24185209 ttgatat 24185203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 16917812 - 16917904
Alignment:
Q  65 tatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttat 159  Q
    ||||||||| | |||||| |||||| |||||| | ||||||| || ||||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  16917812 tatgatcatgaatgagtagactttt-tagtcttgggattgttagactaatctaatgattgaatcatattcaacc-aagtctagaatctattttat 16917904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 31603575 - 31603483
Alignment:
Q  57 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatc-aacctaagtctaaa 148  Q
    |||||||||||||||||  ||||||| | ||||||||||| |  ||||||  |||||||||||||| ||||| ||||| |||| |||||||||    
T  31603575 ttgtctactatgatcatatgtgagtagatttttctagtcttggaattgttaaaataatctaatgatggaatcctaatcaaacccaagtctaaa 31603483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 21511910 - 21511811
Alignment:
Q  57 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaa-atctatt 155  Q
    |||||||||||||| || |||||||| ||  || |||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||||| |||||||    
T  21511910 ttgtctactatgataatgagtgagtagaccatt-tagtcttgggattgttggaatagtctaatgacttaatcctattcaaaccaagtctaaatatctatt 21511812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 28973920 - 28974107
Alignment:
Q  23 gtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgat 122  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||||| ||  |||| |  ||||||||| ||| | ||||||||||||||||||||||     
T  28973920 gtcttttactttcatgtctttatattttaatcccttttctactatgattatgtgtgaatggacttttctaatctcgagattgttggaataatctaatgac 28974019  T
Q  123 tgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaat 210  Q
    | |||| ||||||||| ||||    | |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  28974020 tcaatcctaatcaacccaagttctgactctattttataagaatccatttgctaatctaatctcatcgttattaaattttataacaaat 28974107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 39 - 244
Target Start/End: Original strand, 15154457 - 15154662
Alignment:
Q  39 tctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacc 138  Q
    |||||| ||||||||| ||||||||||| |||||| |||||||| ||| || |||||| | |||||||||| |||||||||||||||||| || ||||||    
T  15154457 tctttacattttaatcccttgtctactacgatcatgagtgagtatactcttttagtcttgggattgttggactaatctaatgattgaatcctattcaacc 15154556  T
Q  139 taagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagtt 238  Q
    |||||||| | || ||||||| | ||| ||||| ||||||||||||| |  ||||| ||| | ||||||||||||||||||   ||||| | ||||||||    
T  15154557 taagtctagactcaattttattaaaattcattttctaatctaatctcgtcattgtttaatctaataacaaatatcaaatgagagaccgaaatgtgaagtt 15154656  T
Q  239 agatat 244  Q
     |||||    
T  15154657 tgatat 15154662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 31371833 - 31371615
Alignment:
Q  21 atgtcttttactttcaagtctttatattt-taatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaat 119  Q
    |||||||||||||||| |||||||||||| |||||  ||||| |||||||||||  ||||||| ||| | ||||||| | || ||||| |||||||||||    
T  31371833 atgtcttttactttcatgtctttatatttataatccattgtcaactatgatcatgtgtgagtagactct-ctagtcttgagaatgttgaaataatctaat 31371735  T
Q  120 gattgaatcataatcaac-ctaagtctaaaatctattttataag---aatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 215  Q
    ||||||| | |||||||| | ||||||||| |||||||| ||||   ||||  ||| |||||||||||||||  || |||||||||||||||||||| ||    
T  31371734 gattgaaccctaatcaacgccaagtctaaactctattttgtaagctgaatctcttttctaatctaatctcatcattattaaattttataacaaatatgaa 31371635  T
Q  216 atgaagaaccgagaagtgaa 235  Q
    | |||||||| ||| |||||    
T  31371634 acgaagaacctagatgtgaa 31371615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 10520488 - 10520324
Alignment:
Q  57 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattt 156  Q
    ||||||||||||||||   ||||||| |||||| || |||   |||||||| ||||||||||||||  |||| ||||||||  |||| || | |||||||    
T  10520488 ttgtctactatgatcacacgtgagtagacttttatactctttggattgttgaaataatctaatgatgaaatcttaatcaactcaagtttagactctattt 10520389  T
Q  157 tataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 221  Q
    | || ||||  || |  |||||||||||||||||| || ||||||| | ||||||||||| ||||    
T  10520388 tgtatgaatttatgttgtaatctaatctcattgttattgaattttaaatcaaatatcaaacgaag 10520324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 215
Target Start/End: Complemental strand, 15048236 - 15048073
Alignment:
Q  52 atctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatc 151  Q
    ||||||||||||| || ||||| |||||||| ||||| ||||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||| || |    
T  15048236 atctcttgtctacaatcatcatgagtgagtatacttt-ctagtcttgggattgttggaatagtctaatgactaaatcctattcaaaccaagtctagaacc 15048138  T
Q  152 -tattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 215  Q
     ||||||||   ||| | ||| |||||||||||||||  || |||| | ||||| ||||||||||    
T  15048137 ttattttatttaaattctttttctaatctaatctcataatttttaagtcttatatcaaatatcaa 15048073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 15106188 - 15106351
Alignment:
Q  52 atctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatc 151  Q
    ||||||||||||| || ||||| |||||||| ||||| ||||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||| || |    
T  15106188 atctcttgtctacaatcatcatgagtgagtatacttt-ctagtcttgggattgttggaatagtctaatgactaaatcctattcaaaccaagtctagaacc 15106286  T
Q  152 -tattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 215  Q
     ||||||||   ||| | ||| |||||||||||||||  || |||| | ||||| ||||||||||    
T  15106287 ttattttatttaaattctttttctaatctaatctcataatttttaagtcttatatcaaatatcaa 15106351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 53000360 - 53000317
Alignment:
Q  173 ctaatctaatctcattgttgttaaattttataacaaatatcaaa 216  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||    
T  53000360 ctaatctaatctcatcgttattaaattttatatcaaatatcaaa 53000317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 15918013 - 15918206
Alignment:
Q  17 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 116  Q
    |||||||||||||||||||| || ||||||||||||| |||| |||||||||||| | | |||||| ||||| || || | | |||||||||||||||||    
T  15918013 ttttatgtcttttactttcacgtgtttatattttaatatcttatctactatgatcttgattgagtagactttccttgtattgggattgttggaataatct 15918112  T
Q  117 aatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaat 210  Q
    |||||||||||| ||||||||  ||||||| |  |||||||| | ||||  || |  |||| ||||||||| ||| |||||||||||| |||||    
T  15918113 aatgattgaatcctaatcaactcaagtctagaccctattttacatgaatttatgttttaatttaatctcatcgttattaaattttatatcaaat 15918206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 28553360 - 28553591
Alignment:
Q  16 tttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatc 115  Q
    |||||||| |||||| ||||| |||| | || |||||||  | || ||| | |||||| ||||| || | ||||||||||| |  |||||| ||||||||    
T  28553360 tttttatgccttttattttcatgtctctttactttaatccttagtttacaaggatcatgagtgaatagatttttctagtcttgatattgttagaataatc 28553459  T
Q  116 taatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattt---tataacaaatat 212  Q
    | |||||||||||||| |||||| ||||||| | |||||||||| | ||| ||||| |||||||||||||||||||||| | |||   ||||||||||||    
T  28553460 tgatgattgaatcatattcaacccaagtctagactctattttattaaaattcattttctaatctaatctcattgttgtttagtttatatataacaaatat 28553559  T
Q  213 caaatgaagaaccgagaagtgaagttagatat 244  Q
    |||| |||| | ||| | |||||||| |||||    
T  28553560 caaacgaaggatcgaaaggtgaagtttgatat 28553591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 37627433 - 37627645
Alignment:
Q  27 tttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaa 126  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||  ||||||| || ||||||||||   ||||||||||||||||||| |||||||    
T  37627433 tttactttcatgtctttatcttttaatctcttgtctactatgatcatgtgtgagtagacatttctagtcttaagattgttggaataatctaaggattgaa 37627532  T
Q  127 tcataatc-aacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaacc 225  Q
    |  ||||| |||| ||||||| |     |||||| |   | | ||  ||||||||||||||| ||| |||||||||||| ||||||||||| |||| ||     
T  37627533 ttctaatcaaaccaaagtctaga----tttttatgaacttgcgtt--ctaatctaatctcatcgttattaaattttatatcaaatatcaaacgaagtact 37627626  T
Q  226 gagaagtgaagttagatat 244  Q
    |||| ||||| || |||||    
T  37627627 gagaggtgaaatttgatat 37627645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 12788678 - 12788829
Alignment:
Q  9 tcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttgg 108  Q
    |||| ||||||||||  ||||| || || |||| | || ||||||| ||||||||| || ||||| |||||||| | ||||||||||| | ||||||||     
T  12788678 tcatttatttttatgcattttatttccatgtctctttactttaatcccttgtctacaattatcatgagtgagtagaattttctagtcttgggattgttga 12788777  T
Q  109 aataatctaatgattgaatcataatcaacctaagtctaaaatctattttata 160  Q
    ||||| |||||||| ||| | || |||||| |||| || | |||||||||||    
T  12788778 aataagctaatgatggaaccctattcaacccaagtatacactctattttata 12788829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 45962741 - 45962834
Alignment:
Q  22 tgtcttttactttcaagtcttta-tattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 116  Q
    ||||||||||||||| || |||| ||||||||||||||||| |||| |||||| | |||||| |||||||||   | | |||||||||||||||||    
T  45962741 tgtcttttactttcatgtttttactattttaatctcttgtcaactaagatcatgactgagtagacttttcta--attgggattgttggaataatct 45962834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 8236350 - 8236453
Alignment:
Q  45 tattttaatctcttgtctactatgatcattagtgagtaaacttttctagtc-tagtgattgttggaataatctaatgattgaatcataatcaacctaagt 143  Q
    |||||||||||  |||||||||||||||| |||||||| || ||| ||||| | | ||||||||||||| |||||||| | |||| || |||| | ||||    
T  8236350 tattttaatcttatgtctactatgatcatgagtgagtagaccttt-tagtctttgggattgttggaatagtctaatgacttaatcttattcaaaccaagt 8236448  T
Q  144 ctaaa 148  Q
    |||||    
T  8236449 ctaaa 8236453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 10234630 - 10234869
Alignment:
Q  8 gtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctact--atgatcattagtgagtaaacttttctagtctagtgattgt 105  Q
    ||||| || ||||||||| |||||||||| |  ||||| || ||||| ||||||||||  || |||||   |||||| || ||| |||||| ||||||||    
T  10234630 gtcatttacttttatgtcatttactttcatgcatttattttctaatcccttgtctactctataatcatgtatgagtagacctttttagtcttgtgattgt 10234729  T
Q  106 tggaataatctaatgattgaatcataatcaa-cctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttata 204  Q
    || |||||||||||||||||||| |||| || || ||||||||| ||||||||||| ||||  |  | |||||||||||  ||||||||||||||| |||    
T  10234730 tgaaataatctaatgattgaatcctaatgaaacccaagtctaaactctattttatatgaatttacgttctaatctaatcgtattgttgttaaatttaata 10234829  T
Q  205 acaaatatcaaatgaagaaccgagaagtgaagttagatat 244  Q
     ||||||||||| |||| ||||||  |||||||| |||||    
T  10234830 tcaaatatcaaacgaagtaccgagcggtgaagtttgatat 10234869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 244
Target Start/End: Original strand, 9046272 - 9046459
Alignment:
Q  58 tgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctatttt 157  Q
    ||||||| |||||||| |||||||| |||| ||||| || |  ||||||||||| || |||||||  |||| || | || | || | |||| ||||||||    
T  9046272 tgtctacgatgatcatgagtgagtagacttgtctagccttggaattgttggaatgatataatgatccaatcctatttaaaccaaatttaaattctatttt 9046371  T
Q  158 ataagaatccatttcctaatctaatctcattg-ttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 244  Q
    || | |||   ||| ||||||||||||||| | || ||||   ||||| ||||||||||| |||| ||||| |||||||||| |||||    
T  9046372 attacaatttgttttctaatctaatctcatagttttttaagccttatatcaaatatcaaacgaaggaccgaaaagtgaagtttgatat 9046459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 23395001 - 23395066
Alignment:
Q  173 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagtt 238  Q
    |||||||| |||||| ||| |||||||| ||| | ||||| |||||||||||||| ||||||||||    
T  23395001 ctaatctattctcatcgtttttaaatttgatatctaatattaaatgaagaaccgaaaagtgaagtt 23395066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 6847828 - 6847746
Alignment:
Q  38 gtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatga 121  Q
    |||||| ||||| ||||| ||||||||||||||||| |||||||| ||  | ||||| | | ||||||||||||| ||||||||    
T  6847828 gtctttttatttaaatcttttgtctactatgatcataagtgagtagac-ctcctagttttgggattgttggaatagtctaatga 6847746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 14545537 - 14545590
Alignment:
Q  56 cttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttgga 109  Q
    ||||||||| |||| |||||||||||| |||| ||| |||| ||||||||||||    
T  14545537 cttgtctacgatgaacattagtgagtagacttctcttgtcttgtgattgttgga 14545590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 12685817 - 12685682
Alignment:
Q  46 attttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtct 145  Q
    |||||||||  |||||||| |||||| | | |||||| |||||   ||||| | |||||||||| ||||||||||||||||||||| |||||| ||||||    
T  12685817 attttaatcctttgtctacaatgatcgtgactgagtacacttt---agtcttgggattgttggactaatctaatgattgaatcatattcaacccaagtct 12685721  T
Q  146 aaaatctattttataagaatccatttcctaatctaatct 184  Q
    ||||||||||||||   ||| | ||| ||||||||||||    
T  12685720 aaaatctattttatttaaattctttttctaatctaatct 12685682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 26266452 - 26266657
Alignment:
Q  40 ctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacct 139  Q
    ||||||||||||||||||| |||| |||||  || ||| |||| ||||||||| | | | |||||||||| |||||||||||||||||| || | ||||     
T  26266452 ctttatattttaatctcttctctaatatgagaatgagtaagtagacttttctaatgttgagattgttggactaatctaatgattgaatcctatttaaccc 26266551  T
Q  140 aagtctaaaatctattttataagaatccatttcctaatctaatctcat-tgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagtt 238  Q
    |||| |  ||| || |||||   ||| | ||| ||||| |||||||||   |||||||  || |||| ||||||||||||||| ||||| ||||||||||    
T  26266552 aagtatggaatttactttatttaaattctttttctaatataatctcatcatttgttaaccttaataaaaaatatcaaatgaaggaccgaaaagtgaagtt 26266651  T
Q  239 agatat 244  Q
     |||||    
T  26266652 tgatat 26266657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 356928 - 356806
Alignment:
Q  7 agtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctact------atgatcattagtgagtaaacttttctagtctagtg 100  Q
    |||||| ||| ||||||||||||| || || |||| ||||| |||||| |||||||| |      ||||||||| |||| |||||| || |||||| | |    
T  356928 agtcatttatctttatgtcttttatttccatgtctctatatattaatcccttgtctattatgatcatgatcattggtgaataaactcttttagtcttgag 356829  T
Q  101 attgttggaataatctaatgatt 123  Q
    ||||| |||||||||||||||||    
T  356828 attgtgggaataatctaatgatt 356806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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