View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0586_high_4 (Length: 653)
Name: NF0586_high_4
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 75 - 624
Target Start/End: Complemental strand, 398076 - 397527
Alignment:
| Q |
75 |
gagcacagaacacatagatgacaaggtcaagagcacttagcgctgcaatgaggtagaaaaacctgtccatgtgcccaacattcaagttattcggaatcca |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
398076 |
gagcacagaacacatagatgacaaggtcaagggcacttagcgctgcaatgaggtagaaaaacctgtccatgtgcccaacatttaagttattcggaatcca |
397977 |
T |
|
| Q |
175 |
tccaggttcctcgcctctagcagtgaatatcatcaccaatttcaccatcatgctgctaacataatttccaagagaaattgatgccatacaaagtgaactt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
397976 |
tccaggttcctcgcctctagcagtgaatatcatcaccaatttcaccatcatgctgctaacatagtttccaagagaaattgatgccatacaaagtgaactt |
397877 |
T |
|
| Q |
275 |
ccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaa |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
397876 |
ccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaa |
397777 |
T |
|
| Q |
375 |
tttgacagaatatactcaaattactttgtttctgtccaggctgaacttgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattcc |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
397776 |
tttgacagaatatactcaaattactttgtttctgtccaggctgaacttgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattcc |
397677 |
T |
|
| Q |
475 |
aataactaggccaactcccattctttgaagttcgcttaaccccttaggattaccgcttaattttccggccaagggaactagaacttggcgataaagtcca |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
397676 |
aataactaggccaactcccattctttgaagttcgcttaaccccttaggattaccgcttaattttccggccaagggaactagaacttggcgataaagtcca |
397577 |
T |
|
| Q |
575 |
gtgcatacaaggacactgcatatatcaaacacagacatggttgctgctgg |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
397576 |
gtgcatacaaggacactgcatatatcaaacacagacatggttgctgctgg |
397527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 75 - 625
Target Start/End: Original strand, 3802708 - 3803258
Alignment:
| Q |
75 |
gagcacagaacacatagatgacaaggtcaagagcacttagcgctgcaatgaggtagaaaaacctgtccatgtgcccaacattcaagttattcggaatcca |
174 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
3802708 |
gagcacagaacacgtagacgacaaggttaagagcacttaacgctgcgatgaggtagaaaaaccaatccatgtgcccatcattcaagttattcggtatcca |
3802807 |
T |
|
| Q |
175 |
tccaggttcctcgcctctagcagtgaatatcatcaccaatttcaccatcatgctgctaacataatttccaagagaaattgatgccatacaaagtgaactt |
274 |
Q |
| |
|
||| |||| |||||| ||| ||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3802808 |
tcccagttcttcgcctttagtagtgattttcatcacggatttcaccatcatgctgctaacatagtttccaagagaaattgaagccatacaaagtgaactt |
3802907 |
T |
|
| Q |
275 |
ccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaa |
374 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3802908 |
ccaaagctttttatgccatccggggcttgaccattgaagaactccaactgacccacatacacaaaaacttctgaagccccaacaagaacatactgtggaa |
3803007 |
T |
|
| Q |
375 |
tttgacagaatatactcaaattactttgtttctgtccaggctgaacttgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattcc |
474 |
Q |
| |
|
||||| |||||||||||||| ||| |||| | | |||| ||| |||||||||| | ||||||| ||| |||||||||| ||||| |||| |||||| |
|
|
| T |
3803008 |
tttgatagaatatactcaaagaactagccttctcttccggcttaacatgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattcc |
3803107 |
T |
|
| Q |
475 |
aataactaggccaactcccattctttgaagttcgcttaaccccttaggattaccgcttaattttccggccaagggaactagaacttggcgataaagtcca |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3803108 |
gataactaggccaactcccattctttgaagttcacttaaccccttaggattaccgcttaattttccggccaagggaacaagaacttggcgataaagtcca |
3803207 |
T |
|
| Q |
575 |
gtgcatacaaggacactgcatatatcaaacacagacatggttgctgctggt |
625 |
Q |
| |
|
|| |||||||||||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
3803208 |
gtacatacaaggacactacctatatcaaacacagacatggttgcagctggt |
3803258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 230 - 348
Target Start/End: Complemental strand, 2745903 - 2745785
Alignment:
| Q |
230 |
ctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgaccca |
329 |
Q |
| |
|
|||||||| ||||| | || ||||| | ||||||||||| ||||||||||||||| | ||||||||||| || |||||| |||||||| ||||| | |
|
|
| T |
2745903 |
ctaacatagtttcctaatgatattgaagtcatacaaagtgcacttccaaagcttttcaatccatcaggtgcctgtgaattgaaaaactccaattgaccaa |
2745804 |
T |
|
| Q |
330 |
catacataaaaacttctga |
348 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
2745803 |
catacatgaaaacttctga |
2745785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 223 - 392
Target Start/End: Original strand, 52809497 - 52809666
Alignment:
| Q |
223 |
catgctgctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaac |
322 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
52809497 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaat |
52809596 |
T |
|
| Q |
323 |
tgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaatatactca |
392 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
52809597 |
tgacccacatacatgaaaacctctgaagcaccaatcagaacatactgtggaatttgatagaatatactca |
52809666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 384
Target Start/End: Original strand, 4708319 - 4708470
Alignment:
| Q |
233 |
acataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacat |
332 |
Q |
| |
|
||||| || ||||| ||||| |||| ||| ||||||| |||||| || || |||| ||||||||||| |||| ||||||||||||| ||||| || |||| |
|
|
| T |
4708319 |
acatagttgccaagggaaatggatgtcatgcaaagtgcacttccgaaactctttaagccatcaggtgtttgagcattgaagaactctaactgccctacat |
4708418 |
T |
|
| Q |
333 |
acataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaa |
384 |
Q |
| |
|
||||||| || || ||||| || | ||| ||||||| || ||||| ||||| |
|
|
| T |
4708419 |
acataaacacctcagaagctcctataagtgcatactgagggatttgccagaa |
4708470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 263 - 390
Target Start/End: Complemental strand, 40744239 - 40744112
Alignment:
| Q |
263 |
caaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaa |
362 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||| |||| ||||||| || || || || || |||||||||||||| || ||||| || | ||| |
|
|
| T |
40744239 |
caaagtgcacttccaaagctctttaatccatcaggtgtttgagcattgaaaaattctaattgtcctacatacataaaaacctcagaagctcctataagtg |
40744140 |
T |
|
| Q |
363 |
catactgtggaatttgacagaatatact |
390 |
Q |
| |
|
||||||| |||||||| ||||| ||||| |
|
|
| T |
40744139 |
catactgaggaatttgccagaagatact |
40744112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 838 times since January 2019
Visitors: 3837