View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_high_45 (Length: 259)
Name: NF0586_high_45
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24890871 - 24890642
Alignment:
| Q |
1 |
catttgcttattcaaaccctaaaaaagctcaaaacaattgcatccgagagtgagtcaaatcgacggtgtatcgaatcggcgggtgctgtcgagtttttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
24890871 |
catttgcttattcaaaccctaaaaaagctcaaaacaattgcatccgagagcgaaacaaatagacggtgtatcgaatcggcaggcgctgtcgagtttttag |
24890772 |
T |
|
| Q |
101 |
catcaatagtaacaaaaaacaacacaagttgctcatcttcatgtttagcaacagaattaattgaagctagttttgatgatgatgatgttgaaggttttgc |
200 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24890771 |
catcaatagtaacacaaaacaacacaagttgttcatcttcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgc |
24890672 |
T |
|
| Q |
201 |
ttttgacttcaaaataggtgcagaagatga |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24890671 |
ttttgacttcaaaataggtgcagaagatga |
24890642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 24899096 - 24899325
Alignment:
| Q |
1 |
catttgcttattcaaaccctaaaaaagctcaaaacaattgcatccgagagtgagtcaaatcgacggtgtatcgaatcggcgggtgctgtcgagtttttag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
24899096 |
catttgcttattcaaaccctaaaaaagctcaaaacaattgcttctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttag |
24899195 |
T |
|
| Q |
101 |
catcaatagtaacaaaaaacaacacaagttgctcatcttcatgtttagcaacagaattaattgaagctagttttgatgatgatgatgttgaaggttttgc |
200 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24899196 |
catcaatagtaacacaaaacaacacaagttgttcatcttcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgc |
24899295 |
T |
|
| Q |
201 |
ttttgacttcaaaataggtgcagaagatga |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
24899296 |
ttttgacttcaaaataggtgcagaagatga |
24899325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 24906555 - 24906784
Alignment:
| Q |
1 |
catttgcttattcaaaccctaaaaaagctcaaaacaattgcatccgagagtgagtcaaatcgacggtgtatcgaatcggcgggtgctgtcgagtttttag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||||||||||| || |||||||||||||||| |
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|
| T |
24906555 |
catttgcttattcaaaccctaaaaaagctcaaaacaattgcctctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttag |
24906654 |
T |
|
| Q |
101 |
catcaatagtaacaaaaaacaacacaagttgctcatcttcatgtttagcaacagaattaattgaagctagttttgatgatgatgatgttgaaggttttgc |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24906655 |
catcaatagtaacacaaaacaacacaagttgttcatcttcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgc |
24906754 |
T |
|
| Q |
201 |
ttttgacttcaaaataggtgcagaagatga |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
24906755 |
ttttgacttcaaaataggtgcagaagatga |
24906784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 5284950 - 5285001
Alignment:
| Q |
178 |
gatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatga |
230 |
Q |
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|||||||| ||||||| |||||||||||| ||||||||||||||||| ||||| |
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|
| T |
5284950 |
gatgatgacgttgaag-ttttgcttttgagttcaaaataggtgcagaggatga |
5285001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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