View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_high_47 (Length: 253)
Name: NF0586_high_47
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_high_47 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 4598769 - 4599014
Alignment:
| Q |
12 |
agagagagaaaataatttagtagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatcc |
111 |
Q |
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| T |
4598769 |
agagagagaaaataatttaatagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtagtcaattctgttagtatcc |
4598868 |
T |
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| Q |
112 |
atgagtgcctcttcgagtgacagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttc----nnnnnnnnnnttattagaca |
207 |
Q |
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| T |
4598869 |
atgagcgcctcttcgagtgacagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttcaaaaaaaaataaaattattagaca |
4598968 |
T |
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| Q |
208 |
attgatttgattaggaaagaaccaaaaaatattaaatggttgatat |
253 |
Q |
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| T |
4598969 |
attgatttgattaggaaagaaccaaaaaatattaaatggttgatat |
4599014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 4623302 - 4623447
Alignment:
| Q |
42 |
agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa |
141 |
Q |
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| T |
4623302 |
agggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttgga |
4623401 |
T |
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| Q |
142 |
tcattgtcctcgttcatacctatgatttaaatttattagaattttc |
187 |
Q |
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| T |
4623402 |
tcattgacttcattcatacctatgatttaaatttattagaattttc |
4623447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 25016030 - 25016140
Alignment:
| Q |
53 |
tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc |
152 |
Q |
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| T |
25016030 |
tgattgcagatgaaacataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcattgagctc |
25016129 |
T |
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| Q |
153 |
gttcataccta |
163 |
Q |
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| T |
25016130 |
gtccataccta |
25016140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 25037313 - 25037423
Alignment:
| Q |
53 |
tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc |
152 |
Q |
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| T |
25037313 |
tgattgcagatgaaatataataaagatgtcgataaaagtaatcgattctgtaagtatccatgagcgcctcttcaagtgatagcgttggatcatttaactc |
25037412 |
T |
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| Q |
153 |
gttcataccta |
163 |
Q |
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| T |
25037413 |
gtccataccta |
25037423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 25002311 - 25002270
Alignment:
| Q |
69 |
ataatatagatgacgataatagtaatcaattctgttagtatc |
110 |
Q |
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| T |
25002311 |
ataataaagatgacgataaaagtaatcaattctgtcagtatc |
25002270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 18805701 - 18805556
Alignment:
| Q |
42 |
agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa |
141 |
Q |
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| T |
18805701 |
agggtgctacctgattgcagatgcaacgtaataaagatgacgataatggtaatcaattctataaatatccatgagcgtctcttcgagtgatagggttgga |
18805602 |
T |
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| Q |
142 |
tcattgtcctcgttcatacctatgatttaaatttattagaattttc |
187 |
Q |
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| T |
18805601 |
tcatcgtactcatttaaacctatgatttaaatttattagagttttc |
18805556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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