View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_high_5 (Length: 613)
Name: NF0586_high_5
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 41 - 603
Target Start/End: Original strand, 3810357 - 3810920
Alignment:
| Q |
41 |
acctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtctttacagcagaaagaatcaatgaagtcaattgatgatctt |
140 |
Q |
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| T |
3810357 |
acctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtatttacagcagaaagaatcaatgaagtcaattgatgatctt |
3810456 |
T |
|
| Q |
141 |
attcatgcagttcagaaagcatttgatgaatattcatgtgtacaatccgataaaaaattttatactctacaaacatgcatggttgaaataatgaagaata |
240 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810457 |
attcatgcagttcagaaagcattcgatgaatattcatgtgtacaatccgataaaaaaatttatactctacaaacatgcatggttgaaataatgaagaata |
3810556 |
T |
|
| Q |
241 |
agggatcaaacaggtacaaaactcctcacaagaagaaagatatgctatataaccaagatgggatacctactcaattaagttgtgattctgagctgattca |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3810557 |
agggatcaaacaggtacaaaactcctcacaagaagaaagatatgctatataaccaagatgggatacctactcaattaagttgtgattctgaactgattca |
3810656 |
T |
|
| Q |
341 |
agaagtcacagattatcttcaaagttttaatgcatcattagcatgattacaatgagaatgcaatgcaagtgttttgtgcttgctttgttcacc-nnnnnn |
439 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810657 |
agaagtcacatattatcttcaaagttttaatgcatcattagcatgattacaatgagaatgcaatgcaagtgttttgtgcttgctttgttcaccttttttt |
3810756 |
T |
|
| Q |
440 |
nnncctagtttcgaactttatagagctagtttgtcatttttaagggattttgttgttcttaggatttaatccttgctactttcattattaatgatattgt |
539 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810757 |
tttcctagtttcgaactttatagagctagtttgtcatttttaagggattttgttgttcttaggatttaatccttgctactttcattattaatgatattgt |
3810856 |
T |
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| Q |
540 |
tttcaccttnnnnnnnttgcagaagtgttactccaatttgatttatgcgcttcaagaatcaaga |
603 |
Q |
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| T |
3810857 |
tttcaccttaaaaaaattgcagaagtgttactccaatttgatttatacgcttcaagaatcaaga |
3810920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
| Q |
10 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
97 |
Q |
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|||||||||| ||||||||| |||| ||||||||||| ||||| || || | |||||||| ||| | ||||| |||| ||||||||| |
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| T |
1329564 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
1329651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 45489233 - 45489304
Alignment:
| Q |
8 |
tgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg |
79 |
Q |
| |
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| T |
45489233 |
tgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg |
45489304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
| Q |
10 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
97 |
Q |
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| T |
42539990 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
42539903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 8187150 - 8187209
Alignment:
| Q |
8 |
tgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt |
67 |
Q |
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| T |
8187150 |
tgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt |
8187209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 40286990 - 40286926
Alignment:
| Q |
21 |
gacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggcttttt |
85 |
Q |
| |
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|||||||| |||| || ||||||||| ||||| ||||||||||| || ||||| || |||||||| |
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| T |
40286990 |
gacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattggatttaggcttttt |
40286926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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