View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_high_6 (Length: 547)
Name: NF0586_high_6
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 4 - 514
Target Start/End: Complemental strand, 10029755 - 10029245
Alignment:
| Q |
4 |
cgagagaaaagaagaagaaaaggaaaaccatggaagtcgtgttccttccaattcggcgaatccaggcttaattttaagggaattgaagcaagcgaaattg |
103 |
Q |
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| T |
10029755 |
cgagaaaaaagaagaagaaaaggaaaaccatgggagtcgtgttccttccaattcggcgagtccaggcttaattttaagggaattgaagcaagcgaaattg |
10029656 |
T |
|
| Q |
104 |
aatctaaaccgagcaacaaacaatatcgctgatgttcgag-----gtggaatcactcaaaaagaaacttcagaaggaaattaaaggatatcactcgagaa |
198 |
Q |
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| T |
10029655 |
aatctaaaccgaacaacgaatgatattgctgatgttcgagtttctgtggaatcactcaacaagaaacttcagaaggaaa-----gaatatcactcgagaa |
10029561 |
T |
|
| Q |
199 |
aaccagagagagttcaactcagaattcttcaaaaataacttcactagagggagagctaaaccaaacaagacttaaactgcaggtggtgaaagatgctgaa |
298 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10029560 |
aaccagagagagtttaactcagaattcttcaaaaataacttcactagaggaagagctaaaccaaacaagacttaaactgcaggtggtgaaagatgctgaa |
10029461 |
T |
|
| Q |
299 |
attgaatgtggttcagatgaaccttccgatattacgaaagagcttcaacgattgagttccgaggcagaacatttcaagaaaatgggagaagttgcgaaat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10029460 |
attgaatgtggttcagatgaaccttccgatattacgaaagagcttcaacgattgagttccgaggcagaacatttcaagaaaatgggagaagttgcgaaat |
10029361 |
T |
|
| Q |
399 |
cagaagttacgagagcaatgtctgatattgaacagacaaaagctatgataagaacatccgaaattagattagttgctgctctaaaaatgaaggaagctgc |
498 |
Q |
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| T |
10029360 |
cagaagttacgagagcaatgtctgagattgaacagacaaaagctatgataagaacatccgaaattagattagttgctgctcgaaaaatgaaggaagctgc |
10029261 |
T |
|
| Q |
499 |
tagggctgccgaagca |
514 |
Q |
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| |||| ||||||||| |
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| T |
10029260 |
tcgggccgccgaagca |
10029245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 513
Target Start/End: Original strand, 26987135 - 26987301
Alignment:
| Q |
347 |
cgattgagttccgaggcagaacatttcaagaaaatgggagaagttgcgaaatcagaagttacgagagcaatgtctgatattgaacagacaaaagctatga |
446 |
Q |
| |
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||||||||||| ||||| || | ||||| |||| | ||||| ||| |||||||||||| | |||| ||||||| ||||| | |||| ||||||||| |
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| T |
26987135 |
cgattgagttcagaggccgagcgtttcagaaaaaagagagaatctgcaaaatcagaagttttaaaagcactgtctgagattgagctgacagaagctatga |
26987234 |
T |
|
| Q |
447 |
taagaacatccgaaattagattagttgctgctctaaaaatgaaggaagctgctagggctgccgaagc |
513 |
Q |
| |
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||| ||| ||||||| || |||||||| || ||||||||| ||||| |||| ||||| ||||| |
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| T |
26987235 |
taaaaactgccgaaatcaggttagttgcggcaaggaaaatgaagcaagcttctagagctgcagaagc |
26987301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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