View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_low_1 (Length: 746)
Name: NF0586_low_1
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 90 - 730
Target Start/End: Complemental strand, 5270267 - 5269615
Alignment:
| Q |
90 |
ctttgtagtctcttcatcacaatttttcattatttatcctttcctatcatattttcccattaacaacgacgttaccctctttaattgctcttcaattgga |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
5270267 |
ctttgtagtctcttcatcacaatttttcattatttatcctttcctatcatattttccctttaacaacgacgttaccctctttaattgctcttcaattgaa |
5270168 |
T |
|
| Q |
190 |
caacaccatctcaaaagctagaaacaaacaaacattggtagctacgacctataataatactggtcagagacatattttcacattcaatgtttagaatata |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
5270167 |
caacaccatctcaaaagctagaaacaaacaaacattggtagcaacgacctataataataatggtcagaaacatgttttcacattcaatgtttagaatata |
5270068 |
T |
|
| Q |
290 |
aggttgttatatgcaaaagagtgatggttaaaattgtcttgaacattcaaaaatcatttgtagcatttcctcgaaaattgatattcaaagcaagaattct |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5270067 |
aggttgttatatgcaaaagagtgatggttaaaattgtcttgaacattcaaaaatcatttgtagcatttcctcgaaaattgatattcaaagcaagaattct |
5269968 |
T |
|
| Q |
390 |
ctgcttcatta-----------ataaaagaaacatctaacacaaaaactaagaatttaaggcccaa-tttaggcaatgactggtgaacgggaacaaatag |
477 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5269967 |
ctgcttcaatacaaacactctgataaaagaaacatctaacacaaaaactaagaatttaaggcccaactttaggcaatgactggtgaacgggaacaaatag |
5269868 |
T |
|
| Q |
478 |
agtttgtagctatcttgcagtcagatgcaatgaactgaacatgttcctccatcactattttgttaatcaacttcagcaaaacttgttccaattcttctcc |
577 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
5269867 |
agtttgtagctagcttgcagtcagatgcaatgaattgaacatgttcctccatcataattttgttaatcaaattcatcaaaacttgttccaattcttctcc |
5269768 |
T |
|
| Q |
578 |
atcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagtctctttct |
677 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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|
| T |
5269767 |
atcactccaaccatgaatttcagccttaacaagtgaaggatctttgcatatcaaatcccacactggaaaattcttccttggcatcacaaagtctctttct |
5269668 |
T |
|
| Q |
678 |
ctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaa |
730 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5269667 |
ctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaa |
5269615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 491 - 733
Target Start/End: Original strand, 5275808 - 5276050
Alignment:
| Q |
491 |
cttgcagtcagatgcaatgaactgaacatgttcctccatcactattttgttaatcaacttcagcaaaacttgttccaattcttctccatcactccaacca |
590 |
Q |
| |
|
|||||| || |||| ||| || ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5275808 |
cttgcaatctgatgaaataaattgaacatgttcctccatcataattttgttaatcaaattcatcaaaacttgttccaattcttctccatcactccaacca |
5275907 |
T |
|
| Q |
591 |
tgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagtctctttctctaagcctcaagc |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
5275908 |
tgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccacactggaaaattcttccttggcatcacaaagtctctttctctaagcctcaaac |
5276007 |
T |
|
| Q |
691 |
tagggcaatagtccccagcaccatcaccaaggtagataaacct |
733 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5276008 |
tagggcaatagtcccctgcaccatcaccaaggtagataaacct |
5276050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 570 - 733
Target Start/End: Original strand, 5271898 - 5272061
Alignment:
| Q |
570 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
669 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
5271898 |
tcttctccatcacaccaaccatgaatttcagccttaacaagtgaagggtctttgcatatcaaatcccacactggaaaattcttccttggcatcacaaagt |
5271997 |
T |
|
| Q |
670 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacct |
733 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
5271998 |
ctctctctttaaacctcaagctagggcaataatctccagcaccatcaccaaggtagataaacct |
5272061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 570 - 733
Target Start/End: Complemental strand, 5251931 - 5251768
Alignment:
| Q |
570 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
669 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| || | |
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|
| T |
5251931 |
tcttctccatcacaccaaccatgaatttcagccttaacaagtgaagggtctttgcatatcaaatcccacactggaaaattcttccttggcatcatgaaat |
5251832 |
T |
|
| Q |
670 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacct |
733 |
Q |
| |
|
|| | ||||||||||| || ||||| ||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
5251831 |
ctttctctctaagccttaaactaggacaataatctccaatgccatcaccaaggtagataaacct |
5251768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 608 - 730
Target Start/End: Complemental strand, 14945163 - 14945041
Alignment:
| Q |
608 |
aagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagtctctttctctaagcctcaagctagggcaatagtcccca |
707 |
Q |
| |
|
|||| |||| ||||| |||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||| ||| |
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|
| T |
14945163 |
aagtaaagggtcttttcatatcaagtcccatactggaaagttcttccttgacataacaaagtctctttctctaagtctcaaactagggcaatagtctcca |
14945064 |
T |
|
| Q |
708 |
gcaccatcaccaaggtagataaa |
730 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
14945063 |
ataccatcaccatggtagataaa |
14945041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 570 - 730
Target Start/End: Original strand, 26314296 - 26314456
Alignment:
| Q |
570 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
669 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
26314296 |
tcttctccatcactccattcataaattttagctttaacaagtgaaggatctttgcatatcaagtcccatacaggaaaattcttccttggcatcacaaagt |
26314395 |
T |
|
| Q |
670 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaa |
730 |
Q |
| |
|
|| ||||| |||| || ||||| || ||||| || ||| |||||||||||| |||||||| |
|
|
| T |
26314396 |
ctttttctttaaggcttaagcttggacaataatctccactaccatcaccaagatagataaa |
26314456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 570 - 733
Target Start/End: Original strand, 43109245 - 43109408
Alignment:
| Q |
570 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
669 |
Q |
| |
|
||||| ||||||||||| ||| ||||| |||||| |||||||||||||||||||| || |||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
43109245 |
tcttcaccatcactccattcataaattttagctttaacaagtgaaggatctttgcaaattaaatcccacacaggaaaattcttccttggcatcacaaagt |
43109344 |
T |
|
| Q |
670 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacct |
733 |
Q |
| |
|
|| ||||| ||||||||||||| || ||||| || ||| |||||| ||||| ||||||||||| |
|
|
| T |
43109345 |
ctttttctttaagcctcaagcttggacaataatctccactaccatccccaagatagataaacct |
43109408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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