View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_low_10 (Length: 484)
Name: NF0586_low_10
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 180 - 475
Target Start/End: Complemental strand, 50987037 - 50986738
Alignment:
| Q |
180 |
acatagaaagtacaaacctataatgaatgaatagacattgaattaaattcgggtaagagcgttttatgcagttgcagcaccatttccattttgagtcaga |
279 |
Q |
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| T |
50987037 |
acatagaaagtacaaacctataatgaatgaatagacattgaattaaattcgggtaagagcgttttatgccgttgcagcaccatttccattttgagtcaga |
50986938 |
T |
|
| Q |
280 |
ccatcttcctggattcaaagttacttcattcatt----gatccctgaactgaaattgaagcctcaaatggtaatgcaaccatcttttccttattcttgtg |
375 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
50986937 |
ccatcttcctggattcaaagttacttcattcattcattgatccctgaactgaaattgaagcctcaaatggtaatgcaaccatcttttccttgttcttgcg |
50986838 |
T |
|
| Q |
376 |
aggctaaattgcatatttaatccccatcatatatagtttgccacttaattaacttgcaatcaaacttttaacctgtgaaacttaaaaactgaattcatct |
475 |
Q |
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| T |
50986837 |
aggctaaattgcatatttaatccccatcatatatagtttgccacttaattaacttgcaatcaaacttttaatctgtggaactaaaaaactgaattcatct |
50986738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 180 - 475
Target Start/End: Complemental strand, 51090170 - 51089871
Alignment:
| Q |
180 |
acatagaaagtacaaacctataatgaatgaatagacattgaattaaattcgggtaagagcgttttatgcagttgcagcaccatttccattttgagtcaga |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51090170 |
acatagaaagtacaaacctataatgaatgaatagacattgaattaaattcgggtaagagcgttttatgccgttgcagcaccatttccattttgagtcaga |
51090071 |
T |
|
| Q |
280 |
ccatcttcctggattcaaagttacttcattcatt----gatccctgaactgaaattgaagcctcaaatggtaatgcaaccatcttttccttattcttgtg |
375 |
Q |
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| T |
51090070 |
ccatcttcctggattcaaagttacttcattcattcattgatccctgaactgaaattgaagcctcaaatggtaatgcaaccatcttttccttgttcttgcg |
51089971 |
T |
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| Q |
376 |
aggctaaattgcatatttaatccccatcatatatagtttgccacttaattaacttgcaatcaaacttttaacctgtgaaacttaaaaactgaattcatct |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
51089970 |
aggctaaattgcatatttaatccccatcatatatagtttgccacttaattaacttgcaatcaaacttttaatctgtggaactaaaaaactgaattcatct |
51089871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 51090315 - 51090244
Alignment:
| Q |
27 |
aattgtatcactatgccattgtattttgaaatactagtagtacatgctgtttatggcgattatgatttgata |
98 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51090315 |
aattgtatcaccatgcctttgtattttgaaatactagtagtacatgctgtttatggcgattatgatttgata |
51090244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 50987182 - 50987112
Alignment:
| Q |
27 |
aattgtatcactatgccattgtattttgaaatactagtagtacatgctgtttatggcgattatgatttgat |
97 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50987182 |
aattgtatcaccatgcctttgtattttgaaatactagtagtacatgctgtttatggcgattatgatttgat |
50987112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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