View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0586_low_11 (Length: 474)

Name: NF0586_low_11
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0586_low_11
NF0586_low_11
[»] chr7 (1 HSPs)
chr7 (9-383)||(44347706-44348066)
[»] chr1 (2 HSPs)
chr1 (18-76)||(39562604-39562662)
chr1 (9-56)||(52216331-52216378)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 44348066 - 44347706
Alignment:
Q  9 agcagagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatgacaacattgaaaaagtttttgaagacatcatca 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348066 agcaaagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatgacaacattgaaaaagtttttgaagacatcatca 44347967  T
Q  109 cgtggcttgacaagcacgccaacaatgatgcctatgaatctacacatccaattgagaattgtaaccatgacattgagacattgacaccagttgtatcatc 208  Q
    | ||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44347966 catggcttgacaagcacgccaacaatgatg---------------atccaattgagaattgtaaccatgacattgagacattgacaccagttgtatcatc 44347882  T
Q  209 agcaaagactatgaaacaatctcataggcgaaaaagttatctttgtgggttgaaaggaagtcgttcgttacaccactcggcaaattagaatgaaataatt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44347881 agcaaagactatgaaacaatctcataggcgaaaaagttatctttgtgggttgaaaggaagtcgttcgttacaccactcggcaaattagaatgaaataatt 44347782  T
Q  309 acactccggttgtgactgtgaccgtgaatgtaggtccatgatgtagctat-atattgttttactgtggacatcttt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44347781 acactccggttgtgactgtgaccgtgaatgtaggtccatgatgtagctataatattgttttactgtggacatcttt 44347706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 39562604 - 39562662
Alignment:
Q  18 aagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatga 76  Q
    ||||| || |||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  39562604 aagaccataaaattgtaccctggaatgtggcatggcttaacagctggggagcctgatga 39562662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 52216378 - 52216331
Alignment:
Q  9 agcagagataagacaattaaattgtaccctggaatgtggcatggttta 56  Q
    |||| |||||||||| | ||||||||||||||||||||||||||||||    
T  52216378 agcaaagataagacactgaaattgtaccctggaatgtggcatggttta 52216331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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