View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0586_low_19 (Length: 455)

Name: NF0586_low_19
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0586_low_19
NF0586_low_19
[»] chr3 (2 HSPs)
chr3 (8-428)||(23178605-23179025)
chr3 (168-246)||(21902097-21902175)
[»] scaffold0028 (1 HSPs)
scaffold0028 (149-237)||(115125-115213)
[»] chr5 (2 HSPs)
chr5 (301-370)||(22063974-22064043)
chr5 (149-237)||(22064107-22064195)
[»] chr7 (1 HSPs)
chr7 (303-343)||(44583604-44583644)
[»] chr6 (1 HSPs)
chr6 (303-335)||(34418051-34418083)
[»] chr4 (1 HSPs)
chr4 (168-216)||(4259157-4259205)


Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 428
Target Start/End: Complemental strand, 23179025 - 23178605
Alignment:
Q  8 gagcagagaggaatatttaaaacaattatgcaagcagtcaataaacaaaagggaggagtatttttcctacatggtcatggtggaactggaaaaactttca 107  Q
    ||||| |||||||||||| |||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23179025 gagcaaagaggaatatttgaaacaattatgcaagcagtcaacaaccaaaagggaagagtatttttcctacatggtcatggtggaactggaaaaactttca 23178926  T
Q  108 tgtggagaactttagcatcagccatacgttctcaatgtcatattgtgttgactgtggcatcaagtggaatagcatcacttttattaccaggaggaagaac 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23178925 tgtggagaactttagcatcagccatacgttctcaacgtcatattgtgttgactgtggcatcaagtggaatagcatcacttttattaccaggaggaagaac 23178826  T
Q  208 agcacattcagagtttaaaattcctattcctgcatttgattgctcgacatgcaatatagaaaaaggaagtgaaattgcggagctactgaaactaacaaaa 307  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23178825 agcacattcagagtttaaaattcctgttcctgcatttgattgctcgacatgcaatatagaaaaaggaagtgaaatcgcggagctactgaaactaacaaaa 23178726  T
Q  308 ctcataatatgggatgaagctccaatgacccataaattttgctttgaggcactagacaaaactcttaaagacataatgagttcaagcacttcaatatttg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23178725 ctcataatatgggatgaagctccaatgacccataaattttgctttgaggcactagacaaaactcttaaagacataatgagttcaagcacttcaatatttg 23178626  T
Q  408 gaggaaaaatagtagtttttg 428  Q
    |||||||||||||||||||||    
T  23178625 gaggaaaaatagtagtttttg 23178605  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 21902175 - 21902097
Alignment:
Q  168 caagtggaatagcatcacttttattaccaggaggaagaacagcacattcagagtttaaaattcctattcctgcatttga 246  Q
    ||||||| |||||||| |||||  ||||||||||||| |||||||||||  |||| ||||| ||| | ||||| |||||    
T  21902175 caagtggtatagcatctcttttgctaccaggaggaaggacagcacattctaagttcaaaatacctgtacctgcctttga 21902097  T

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Target: scaffold0028 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 115213 - 115125
Alignment:
Q  149 attgtgttgactgtggcatcaagtggaatagcatcacttttattaccaggaggaagaacagcacattcagagtttaaaattcctattcc 237  Q
    ||||| ||||| || ||||||||||| |||||||| |||||| | |||||||| ||||| || |||||| |||||||||| ||| ||||    
T  115213 attgtcttgacagttgcatcaagtggtatagcatctcttttactcccaggaggtagaactgcccattcaaagtttaaaatacctgttcc 115125  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 22064043 - 22063974
Alignment:
Q  301 aacaaaactcataatatgggatgaagctccaatgacccataaattttgctttgaggcactagacaaaact 370  Q
    ||||||| ||||||||||||| |||||||||||||| || ||||||| |||| ||||  |||||| ||||    
T  22064043 aacaaaattcataatatgggacgaagctccaatgactcacaaatttttctttcaggctttagacagaact 22063974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 22064195 - 22064107
Alignment:
Q  149 attgtgttgactgtggcatcaagtggaatagcatcacttttattaccaggaggaagaacagcacattcagagtttaaaattcctattcc 237  Q
    ||||| ||||| || ||||||||||| ||| |||||||| || | |||||||| ||||| || |||||| |||||||||| ||| ||||    
T  22064195 attgtcttgacagttgcatcaagtggtataacatcacttctacttccaggaggtagaactgctcattcaaagtttaaaatacctgttcc 22064107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 44583604 - 44583644
Alignment:
Q  303 caaaactcataatatgggatgaagctccaatgacccataaa 343  Q
    |||||||||| || |||||||| ||||||||||||||||||    
T  44583604 caaaactcatcatttgggatgaggctccaatgacccataaa 44583644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 34418083 - 34418051
Alignment:
Q  303 caaaactcataatatgggatgaagctccaatga 335  Q
    |||||||||||||||||||||||||||| ||||    
T  34418083 caaaactcataatatgggatgaagctcctatga 34418051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 4259205 - 4259157
Alignment:
Q  168 caagtggaatagcatcacttttattaccaggaggaagaacagcacattc 216  Q
    ||||||| |||||||| |||||  ||||||||||||| |||||||||||    
T  4259205 caagtggtatagcatctcttttgctaccaggaggaaggacagcacattc 4259157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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