View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0586_low_2 (Length: 732)

Name: NF0586_low_2
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0586_low_2
NF0586_low_2
[»] chr1 (1 HSPs)
chr1 (97-725)||(37057529-37058154)


Alignment Details
Target: chr1 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 97 - 725
Target Start/End: Complemental strand, 37058154 - 37057529
Alignment:
Q  97 cttttctagtgaagttttcccttttttcttcacttaaaaattaacacaaggattgtaatatttgatcaaagatgttgttgcaatgttatttcaacttcca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37058154 cttttctagtgaagttttcccttttttcttcacttaaaaattaacacaaggattgtaatatttgatcaaagatgttgttgcaatgttatttcaacttcca 37058055  T
Q  197 aactttattcagccctcaagtttaagagtttgttttacttatatctaaaggttcatcacatgctaatagaatggtcccatccacatgagattttaaaaaa 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37058054 aactttattcagccctcaagtttaagagtttgttttacttatatctaaaggttcatcacatgctaatagaatggtcccatccacatgagattttaaaaaa 37057955  T
Q  297 tatatccacaattgtgattagatgaatactttttaagtatctaaaagttttgttgaatattgttgtttctgaccaggttaagatccattttttcagagga 396  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37057954 tatatccacaattgtgattagatgaatactctttaagtatctaaaagttttgttgaatattgttgtttctgaccaggttaagatccattttttcagagga 37057855  T
Q  397 ttggatccttccaaaccatctttaatctgtactgcacatgtgtccctggacaattgttcggattagagttagaaagaccaaaaaccttaatccaatagac 496  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37057854 ttggatccttccaaaccatctttaatct---ctgcacatgtgtccctggacaattgttcggattagagttagaaagaccaaaaaccttaatccaatagac 37057758  T
Q  497 tccatccaggtgcacgcttttctaccctaaaaatcttgtatatatttgatgcattttatacttagtttgagtgtttgcatgtataccattccccttcgca 596  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37057757 tccatccaggtgcacacttttctaccataaaaatcttgtatatatttgacgcattttatacttagttggagtgtttgcatgtataccattccccttcgca 37057658  T
Q  597 agagaatgagttgttgttcaaagtttaaccacttcaacgcctccgcaacaatcatcggactgtagatcttagatcccatcatgtcgaattagatacatat 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37057657 agagaatgagttgttgttcaaagtttaaccacttcaacgcctccgcaacaatcatcggaccgtagatcttagatcccatcatgtcgaattagatacatat 37057558  T
Q  697 ccatcattcaatcacttaatttcatatca 725  Q
    | |||||||||||||||||||||||||||    
T  37057557 caatcattcaatcacttaatttcatatca 37057529  T

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