View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_low_20 (Length: 453)
Name: NF0586_low_20
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Complemental strand, 45730099 - 45729669
Alignment:
| Q |
16 |
atgcgtgtcatacattaaaatacacaccttcaatcaggagtgttcatgcaacaaggttttgatatactctctnnnnnnntatatgaaaatagcttaaaac |
115 |
Q |
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| T |
45730099 |
atgcgtgtcatacattaaaatacacaccttcaatcagaagtgtccatgcaacaaagttttcatatactctctaaaaaa-tatatgaaaatagcttaaaac |
45730001 |
T |
|
| Q |
116 |
ttgtacgaaaacaacaactttttataaaagtaactcaaactataagctataaactgcaaagtaagtaatttgtttatcaaaaacactaccttaattaaca |
215 |
Q |
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| T |
45730000 |
ttgtacgaaaacaacaactttttataaaagtaactcaaactataagctataaactgcaaagtaagtaatttgtttatcaaaaacactaccttaattaaca |
45729901 |
T |
|
| Q |
216 |
caatcttaccttaaagtcattgtttgcaatcatgcctatggcacagaagagagtggcaaacatgcacgtaacgaactgaaattccataacaaaagaataa |
315 |
Q |
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| T |
45729900 |
caatcttaccttaaagtcattgtttgcaatcatgcctatggcacagaagagagtggcaaacatgcacgtaacgaactgaaattccataacaaaagaataa |
45729801 |
T |
|
| Q |
316 |
gtgacgggttgtttaatcttcttataaaccaactcaaccgaaggcaaaataaatccatacaatgcagaagcagcaaccgtggttgaaaaactaatccaat |
415 |
Q |
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| T |
45729800 |
gtgacgggttgtttaatcttcttataaaccaactcaaccgaaggcaaaataaatccatacaatgcagaagcagcaaccgtggttgaaaaactaatccaat |
45729701 |
T |
|
| Q |
416 |
attgttttgcagaaacaccagcaggacgatca |
447 |
Q |
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| T |
45729700 |
attgttttgcagaaacaccagcaggacgatca |
45729669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 217 - 447
Target Start/End: Complemental strand, 45725710 - 45725480
Alignment:
| Q |
217 |
aatcttaccttaaagtcattgtttgcaatcatgcctatggcacagaagagagtggcaaacatgcacgtaacgaactgaaattccataacaaaagaataag |
316 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
45725710 |
aatcttaccttaaagtcattgtttataatcatgcctatggtacagaagatagtggcaaacatgcacataacgaactgaaattccataacaagagaataag |
45725611 |
T |
|
| Q |
317 |
tgacgggttgtttaatcttcttataaaccaactcaaccgaaggcaaaataaatccatacaatgcagaagcagcaaccgtggttgaaaaactaatccaata |
416 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |||| ||| |
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| T |
45725610 |
tgatgggttgtttaatcttcttataaaccaactcaaccgcaggcaaaacaaatccatacaatgcagatgcagcaaccgtggttgaaaaaccaatcgcata |
45725511 |
T |
|
| Q |
417 |
ttgttttgcagaaacaccagcaggacgatca |
447 |
Q |
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| T |
45725510 |
ttgttttgcagaaacaccagcaggacgatca |
45725480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 45725768 - 45725723
Alignment:
| Q |
135 |
ttttataaaagtaactcaaactataagctataaactgcaaagtaag |
180 |
Q |
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| T |
45725768 |
ttttataaaagtaacgcaaactataagctataaactgcaaaataag |
45725723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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