View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_low_23 (Length: 426)
Name: NF0586_low_23
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 37871090 - 37870800
Alignment:
| Q |
16 |
atcaaccatcatgaattttaacnnnnnnntgacaccaacaacaaacatacatccacactagctaccaaatatcatatagtctatgcccccaatcaataat |
115 |
Q |
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| T |
37871090 |
atcaaccatcatgaattttaacaaaaaaatgacaccaacaacaaacatacatccacactagctaccaaatatgatatagtctatgcccccaatcaataat |
37870991 |
T |
|
| Q |
116 |
taaaaataatattaaggaaataaattagtgctccaacaataaactcaaaatattctagattgaattaaatctaacatatctcaaaaatagtatagttttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37870990 |
taaaaataatattaaggaaataaattagtgctccaacaataaactcaaaatattctagattgaattaaatctaacatatctc-aaaatagtatagttttt |
37870892 |
T |
|
| Q |
216 |
ccaacaagataatttgcttataccacttcgtttctccactctcttcctcatcacattcatataattatcttccaattgcatggccaaaaccc |
307 |
Q |
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| T |
37870891 |
ccaacaagataattttcttataccacttcgtttctccactctcttcctcatcacattcatataattatcttccaattgcatggccaaaaccc |
37870800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 37870773 - 37870706
Alignment:
| Q |
333 |
aagaaagccttttcttctggaaatcaaagagtttaaaacaaaggatgcagtttaattgaactttgtga |
400 |
Q |
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| T |
37870773 |
aagaaagccttttcttctggaaatcaaagagtttaaaacaaaggatgcagtttaattgaactttgtga |
37870706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 46819458 - 46819510
Alignment:
| Q |
133 |
aaataaattagtgctccaacaataaactcaaaatattctagattgaattaaat |
185 |
Q |
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| T |
46819458 |
aaataaattagtgctctaacaataacctcaaaacagtataggttgaattaaat |
46819510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 32800173 - 32800121
Alignment:
| Q |
115 |
ttaaaaataatattaaggaaataaattagtgctccaacaataaactcaaaata |
167 |
Q |
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||||||||||||| | | ||||||||||||| ||||||||||| |||||||| |
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| T |
32800173 |
ttaaaaataatatcatgaaaataaattagtgttccaacaataacatcaaaata |
32800121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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