View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_low_29 (Length: 397)
Name: NF0586_low_29
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 11934901 - 11934522
Alignment:
| Q |
1 |
aattaactagtattcaacactcggttttattttccacactcaaacttattactaaataacatgcaacaaacaatattaacttgaaattaacaaagtcgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
11934901 |
aattaactagtattcaacactcggttttattttccacactcaaacttattactaaataacatgcaa---acaatattaacttgaaattaacaaagtcacc |
11934805 |
T |
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| Q |
101 |
atctttctaattctttctatgcggaagagtagggatgctttgttcattcctaaagaaattgtcaggatcaactttagtcttaatttccaccaatctatca |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11934804 |
atctttctaattctttctatgaggaagagtagggatgctttgttcattcctaaagaaattgtcaggatcaacttttgtcttaatttccaccaatctatca |
11934705 |
T |
|
| Q |
201 |
aaattatccttaaaatactcaactccataaactcttccttcagcataactattcttaccattatgattaattcccaaatcaagatccttataattnnnnn |
300 |
Q |
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| T |
11934704 |
aaattatccttaaaatactcaactccataaactcttccttcagcataactattcttaccattatgattaattcccaaatcaagatccttataattaaaaa |
11934605 |
T |
|
| Q |
301 |
nngcctctcttggattcttggacacaaatggagtcatatatttgtgaagttttctagtcaaacctatgtaatgatcagcaaca |
383 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11934604 |
aagcctctcttggattcttggacacaaaaggagtcatatatctgtgaagttttctagtcaaacctatgtaatgatcagcaaca |
11934522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 11948127 - 11947743
Alignment:
| Q |
1 |
aattaactagtattcaacactcggttttattttccacactcaaacttat----tactaaataacatgcaacaaacaatattaacttgaaattaacaaagt |
96 |
Q |
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|||||||||||||||||||| | ||||||||| ||||| || ||||||| |||||| ||||| ||||||||||||||||| ||||||||||| || |
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| T |
11948127 |
aattaactagtattcaacacccagttttattt-ccacaatccaacttatatactactaactaacaaataacaaacaatattaactagaaattaacaa-gt |
11948030 |
T |
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| Q |
97 |
cgccatctttctaattctttctatgcggaagagtagggatgctttgttcattcctaaagaaattgtcaggatcaactttagtcttaatttccaccaatct |
196 |
Q |
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| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11948029 |
cttcatctttctaattcttcctatgaggaagagtagggatgctttgttcattcctaaagaaattgtcaggatcaacttttgtcttaatttccaccaatct |
11947930 |
T |
|
| Q |
197 |
atcaaaattatccttaaaatactcaactccataaactcttccttcagcataactattcttaccattatgattaattcccaaatcaagatccttataattn |
296 |
Q |
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| T |
11947929 |
atcaaaattatccttaaaatactcaactccataaactcttccttcagcataactattcttaccattatgattaattcccaaatcaagatccttataatta |
11947830 |
T |
|
| Q |
297 |
nnnnnngcctctcttggattcttggacacaaatggagtcatatatttgtgaagttttctagtcaaacctatgtaatgatcagcaaca |
383 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11947829 |
aaaaaagcctctcttggattcttggacacaaaaggagtcatatatctgtgaagttttctagtcaaacctatgtaatgatcagcaaca |
11947743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 11918587 - 11918490
Alignment:
| Q |
135 |
atgctttgttcattcctaaagaaattgtcaggatcaactttagtcttaatttccaccaatctatcaaaattatccttaaaatactcaactccataaac |
232 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||| ||||||||||||||| || | || ||||||||| |
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| T |
11918587 |
atgctttgttcattcctaaagaaattactaggatcaaccttagtcttaatttccactaacctatgaaaattatccttaaagtattgaattccataaac |
11918490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 260
Target Start/End: Complemental strand, 11822236 - 11822114
Alignment:
| Q |
138 |
ctttgttcattcctaaagaaattgtcaggatcaactttagtcttaatttccaccaatctatcaaaattatccttaaaatactcaactccataaactcttc |
237 |
Q |
| |
|
|||||||||||||| || || || ||||||||||| ||||||||| | ||||| ||||||||||||| ||||| |||| | ||||||||| | |
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| T |
11822236 |
ctttgttcattcctgaaaaagttatcaggatcaacagcagtcttaatcttaaccaacctatcaaaattattattaaagtacttagtgccataaacttcac |
11822137 |
T |
|
| Q |
238 |
cttcagcataactattcttacca |
260 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
11822136 |
cttcttcataactattcttacca |
11822114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 11918411 - 11918361
Alignment:
| Q |
308 |
tcttggattcttggacacaaatggagtcatatatttgtgaagttttctagt |
358 |
Q |
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||||||||||||||||||||| ||||||||||| || | ||||| |||||| |
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| T |
11918411 |
tcttggattcttggacacaaaaggagtcatatacttataaagttctctagt |
11918361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 11786182 - 11786238
Alignment:
| Q |
162 |
tcaggatcaactttagtcttaatttccaccaatctatcaaaattatccttaaaatac |
218 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |||| |||||||| || |||||| |
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| T |
11786182 |
tcaggatccactttagtcttaattttcaccaacctattgaaattatctttgaaatac |
11786238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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