View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_low_30 (Length: 397)
Name: NF0586_low_30
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 11934877 - 11935169
Alignment:
| Q |
1 |
accgagtgttgaatactagttaattagttgtttacttgtaatgttagtttgtttggtttgataatgaataaattaaaatttacttattgttttaggtcta |
100 |
Q |
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| T |
11934877 |
accgagtgttgaatactagttaattagttgtt-acttgtaatgttagtttgtttggtttgataatgaataaaataaaatttacttattgtttg-ggtcta |
11934974 |
T |
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| Q |
101 |
agatttaaattctaactactaaagtttgtttctttattctgttatatatcttgtattttctctaaattatttttcactctagactagatatgttcctatg |
200 |
Q |
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| T |
11934975 |
agatttaaattctaactactaaagtttgtttctttattctgttatatatcttgtattttctctaaattatttttcactctagactagatatgtt-ctatg |
11935073 |
T |
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| Q |
201 |
aatcttggctgcaaactta---attattggttgtacattaaaattaaaagtcatataatcatcttataagaaataatgggggtttcaatttcatcc |
293 |
Q |
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| T |
11935074 |
acgcttggctgcaaacttaattattattggttgtacattaaaattaaaagtcatatcatcatcttataagaaataatgggggtttcaatttcatcc |
11935169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 11935509 - 11935588
Alignment:
| Q |
285 |
atttcatccatgcatactatacccaaaacaagcaagtcttctagagggttatcttgattgactaaatcccatatcagaag |
364 |
Q |
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| T |
11935509 |
atttcatccatgcatactatagccaaaacaagcaagtcttctagagggttatcttgattgactaaatccaatatcagaag |
11935588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 11948108 - 11948219
Alignment:
| Q |
6 |
gtgttgaatactagttaattagttgtt--tact-tgtaatgttagtttgtttggtttgataatgaataaattaaaatttacttattgttttaggtctaag |
102 |
Q |
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| T |
11948108 |
gtgttgaatactagttaattagttgttactacaatgtaatgtaagtttgtttggtttgataatgaataaactaaaatttacttattg-tttaggtccaag |
11948206 |
T |
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| Q |
103 |
atttaaattctaa |
115 |
Q |
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||||||| ||||| |
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| T |
11948207 |
atttaaactctaa |
11948219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 11948214 - 11948297
Alignment:
| Q |
160 |
ctctaaattatttttcactctagactagatatg--ttcctatg-aatcttggctgcaaacttaattattggttgtacattaaaa |
240 |
Q |
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||||||||||||||||||||||||||||||||| || ||||| || |||||||| ||| ||||||||||||||||||||||| |
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| T |
11948214 |
ctctaaattatttttcactctagactagatatgttttactatgaaagcttggctggaaatataattattggttgtacattaaaa |
11948297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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