View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_low_36 (Length: 359)
Name: NF0586_low_36
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 24898950 - 24898624
Alignment:
| Q |
15 |
agaataatgagatgatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaatagccatttttcgatgctttctctgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24898950 |
agaataatgagatgatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgt |
24898851 |
T |
|
| Q |
115 |
cgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24898850 |
cgtaggttatgcctgttgagacagtaactggatcattcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgt |
24898751 |
T |
|
| Q |
215 |
gtatgattcaagtagctgaaaaattatttggactttgaaatgttttagttttttgatggagagttgagaaaaagaatgaatgaatgaatatgagagaagg |
314 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||| ||| | |||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24898750 |
gtatgattcaagtagctgaaaaattgtttggacgttgaaatgcttttgctttttggtggagagttgagaaaaagaatgaat----gaatatgagagaagg |
24898655 |
T |
|
| Q |
315 |
gtggtggtattgttgttatttatagtgtatc |
345 |
Q |
| |
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| T |
24898654 |
gtggtggtattgttgttatttatagtgtatc |
24898624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 24891017 - 24891344
Alignment:
| Q |
15 |
agaataatgagatgatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaatagccatttttcgatgctttctctgt |
114 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24891017 |
agaataatgagatgatttgcatcatgtgtgagttgttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgt |
24891116 |
T |
|
| Q |
115 |
cgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24891117 |
cgtaggttatgcctgttgagacagtaactggatctttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgt |
24891216 |
T |
|
| Q |
215 |
gtatgattcaagtagctgaaaaattatttggactttgaaatgttttagttttttgatggagagttgagaaaaagaatgaatgaatgaatatgagagaagg |
314 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| | | |||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24891217 |
gtatgattcaagtagctgaaaaattgtttggactttgaaatgttattgctttttggtggagagttgagaaaaa----gaatgaatgaatatgagagaagg |
24891312 |
T |
|
| Q |
315 |
gtggtggtattgttgttatttatagtgtatctgtg |
349 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |
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| T |
24891313 |
gtggtggta---ttgttatttatagtgtatctgtg |
24891344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 24906409 - 24906139
Alignment:
| Q |
15 |
agaataatgagatgatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaatagccatttttcgatgctttctctgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24906409 |
agaataatgagatgatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgt |
24906310 |
T |
|
| Q |
115 |
cgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24906309 |
cgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgt |
24906210 |
T |
|
| Q |
215 |
gtatgattcaagtagctgaaaaattatttggactttgaaatgttttagttttttgatggagagttgagaaa |
285 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| | | |||||| ||||||||||||||| |
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| T |
24906209 |
gtatgattcaagtagctgaaaaattgtttggactttgaaatgttattgctttttggtggagagttgagaaa |
24906139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 43262623 - 43262515
Alignment:
| Q |
48 |
agttgttttgtgacaggacatgttttgttttccgatgaaaatagccatttttcgatgctttctctgtcgtaggttatgcctgttgagacagtaactggat |
147 |
Q |
| |
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||||||||||| ||||||||||| |||||| | ||||||||||||||||| || |||||||| ||||||||||| ||||||||||| || || |||| |
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| T |
43262623 |
agttgttttgtaacaggacatgtcatgtttttcttcgaaaatagccatttttcaatactttctctatcgtaggttatacctgttgagactgttaccggat |
43262524 |
T |
|
| Q |
148 |
ccttcatga |
156 |
Q |
| |
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||||||||| |
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|
| T |
43262523 |
ccttcatga |
43262515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 36744552 - 36744684
Alignment:
| Q |
50 |
ttgttttgtgacaggacatgttttgttttccgatgaaaatagccatttttcgatgctttctctgtcgtaggttatgcctgttgagacagtaactggatcc |
149 |
Q |
| |
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||||||||| |||||||| || ||||||| ||||||||| ||||||||| ||| ||||||||||||| || || ||||| || | || || ||||| |
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| T |
36744552 |
ttgttttgtaacaggacaagtattgttttggaatgaaaataaccatttttctatgttttctctgtcgtacgtaattcctgtggaaagtgtgacaggatct |
36744651 |
T |
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| Q |
150 |
ttcatgagttgtagtgaaatagggcatagaaaa |
182 |
Q |
| |
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||||| |||||||| ||||| ||||| |||||| |
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| T |
36744652 |
ttcataagttgtagggaaattgggcaaagaaaa |
36744684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 33089116 - 33089075
Alignment:
| Q |
92 |
ccatttttcgatgctttctctgtcgtaggttatgcctgttga |
133 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
33089116 |
ccatttttcgatgctgtctctgtcgtaggttatgccggttga |
33089075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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