View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_low_4 (Length: 695)
Name: NF0586_low_4
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 86 - 685
Target Start/End: Complemental strand, 43716007 - 43715409
Alignment:
| Q |
86 |
tgagccatatctcagaattacaattgaaagtttgcatagaactggaaaaatcatatttgaaatgtcttctcattcaagtggtaaggttttaatataatct |
185 |
Q |
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| T |
43716007 |
tgagccatatctcagaattacaattgaaagtttgcatagaactggaaaaatcatatttgaaatgtcttctcattcaattggtaaggttttaatagaatct |
43715908 |
T |
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| Q |
186 |
ttattgacatgcacaaatgagatagttggttctgttgctttatttcttattatttgacatatttaaaagttggannnnnnnatggtccattataccatgt |
285 |
Q |
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| T |
43715907 |
ttattgacatgcacaaatgagatagttggttctgttgctttatttcttattatttgacatatttaaaagttggatttttttatggtccattataccatgt |
43715808 |
T |
|
| Q |
286 |
tttcctttcaatccatgtttctattttgaacattggcttacgagctacaacaagtgtgtgagttttaaaaaattggatgcatctaattttgtatgacaga |
385 |
Q |
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| T |
43715807 |
tttcctttcaatccatgtttctattttgaacattggcttacgagctacaacaagtgtgtgggttttaaaaaattggatgcatctaattttgtatgacaga |
43715708 |
T |
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| Q |
386 |
tttttatgcaattgctttgttcgccttgttcatatggtttgcatatccataagtgattcttttactgtgttcaaatttatagttagaaatcaactataac |
485 |
Q |
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| T |
43715707 |
tttttatgcaattgctttgttcgccttgttcatatggtttgcatatccataagtgattcttttactgtgttcaaatttatagttagaaatcaactgtaac |
43715608 |
T |
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| Q |
486 |
aaatcacttgtgcgatgaaattttttcattcatttttcaatgagttcagtttatctgtttttgtaaattagccaaattacttaaagataatagggaaaga |
585 |
Q |
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| T |
43715607 |
aaatcacttgcgcgatgaaattttttcattcatttttcaatgagttcagtttatct-attttgtaaattagccaaattacttaaagataatagggaaaga |
43715509 |
T |
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| Q |
586 |
caccaaatgcaacttcatgaggggataaattttttgcagatttcagatggtctatactaaaacgccgcattgaatcttatcatattgcaaaaggtctgtg |
685 |
Q |
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| T |
43715508 |
caccaaatgcaacttcatgaggggataaattttttgcagatttcagatggtctatactaaaacgccgcattgaatcttatcatattgcaaaaggtctgtg |
43715409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 86 - 409
Target Start/End: Original strand, 52891622 - 52891929
Alignment:
| Q |
86 |
tgagccatatctcagaattacaattgaaagtttgcatagaactggaaaaatcatatttgaaatgtcttctcattcaagtggtaaggttttaatataatct |
185 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52891622 |
tgagccgtatctcagaattacaattgaacgtttgcatagaactggaaaa-tcatatttgaaatgtcttctcattcaagtggtaaggttttaatagaatct |
52891720 |
T |
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| Q |
186 |
ttattgacatgcacaaatgagatagttggttc-tgttgctttatttcttattatttgacatatttaaaagttggannnnnnnatggtccattataccatg |
284 |
Q |
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| T |
52891721 |
tcattgacatgcacaaatgagatagttggctcctgttgctttctttctt----------------aaaagctggattttcg-atggtccattataccatg |
52891803 |
T |
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| Q |
285 |
ttttcctttcaatccat-gtttctattttgaacattggcttacgagctacaacaagtgtgtgagttttaaaaaattggatgcatctaattttgtatgaca |
383 |
Q |
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| T |
52891804 |
ttttcttttcaacccattgtttctattttgaacattggcttacgagctacaacaagtgtgtgggttataagaagttggatgcatctaattttgtatggca |
52891903 |
T |
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| Q |
384 |
gatttttatgcaattgctttgttcgc |
409 |
Q |
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| T |
52891904 |
gttttttatgcaattgctttgttcgc |
52891929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 440 - 678
Target Start/End: Original strand, 52891930 - 52892170
Alignment:
| Q |
440 |
gattcttttactgtgttcaaatttatag--ttagaaatcaactataacaaatcacttgtgcgatgaaattttttcattcatttttcaatgagttcagttt |
537 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| || |||||||||| |||||||||| ||||||||||||||||||||| |||||| |
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| T |
52891930 |
gattcttttactgagttcaaatttatagagttagaaatcaactgctacgaatcacttgtcggatgaaatttattcattcatttttcaatgagtgcagttt |
52892029 |
T |
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| Q |
538 |
atctgtttttgtaaattagccaaattacttaaagataatagggaaagacaccaaatgcaacttcatgaggggataaatttt-ttgcagatttcagatggt |
636 |
Q |
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| T |
52892030 |
atctatctt-gtaagttggcaaaatttcttaaagataatagggaaagacaccaaatgcaacttcataagaggatatatttttttgcagatttcagatggt |
52892128 |
T |
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| Q |
637 |
ctatactaaaacgccgcattgaatcttatcatattgcaaaag |
678 |
Q |
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| T |
52892129 |
ctgtactacaacgccgcattgactcttagcatattgcaaaag |
52892170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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