View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0586_low_5 (Length: 690)
Name: NF0586_low_5
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 204 - 661
Target Start/End: Complemental strand, 17860389 - 17859932
Alignment:
| Q |
204 |
aaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgcttcaatgacatgtatggtg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17860389 |
aaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgcttcaatgacatgtatggtg |
17860290 |
T |
|
| Q |
304 |
accaacctacattttttactgatcatattgctgtgatccatactcagctgttcaaactgttcaattggtacaaggatgcctatgaccagcaacataattc |
403 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17860289 |
accaacctacattttttactgatctgattgctgtgatccatactcagctgttcaaactgttcaattggtacaaggatgcctatgaccagcaacataattc |
17860190 |
T |
|
| Q |
404 |
tggtcatctatctgcaagtccatccgagtctagttatgttagcgagaatgtgatcccagctaaagtcccatctcatttggcaagggctgaagcttttaag |
503 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
17860189 |
tggtcatccatctgcaagtccatccgagtctagttatgttagcgagaatgtgatcccagctgaagtcccatctcatttggcaagggctgaagcttttaag |
17860090 |
T |
|
| Q |
504 |
gagcatcttaaactgaaggaatcaatagttnnnnnnnntgagcttgaaaggtacctagatgaggagcgtgcggaggatgtcaactttgacatccttcttt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17860089 |
gagcatcttaaactgaaggaatcaatagttaaaaaaaatgagcttgaaaggtacctagatgaggagcgtgcggaggatgtcaactttgagatccttcttt |
17859990 |
T |
|
| Q |
604 |
ggtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgtttt |
661 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17859989 |
ggtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgtttt |
17859932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 17860991 - 17860793
Alignment:
| Q |
11 |
tagctgttgcttacttgaagaaaagaattaataacatgggaggtttaatgggtgatggttctttctttcatcttcgttgttgcgctcatatcctaaacct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17860991 |
tagctgttgcttacttgaagaaaagaattaataacatgggaggtttaatgggtgatggttctttctttcatcttcgttgttgcgctcatatcctaaacct |
17860892 |
T |
|
| Q |
111 |
tgtggtgggagatggtttaaaacaaaatgagctctctatttcttcaattagaaatgctgttaggtttgtgagatcgtcaccccaaagatctgcaaaatt |
209 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17860891 |
tgtggtgggggatggtttaaaacaaaatgagctctctatttcttcaattagaaatgctgttaggtttgtgagatcgtcaccccaaagatctgcaaaatt |
17860793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 204 - 661
Target Start/End: Original strand, 34915423 - 34915880
Alignment:
| Q |
204 |
aaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgcttcaatgacatgtatggtg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34915423 |
aaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgcttcaatgacatgtatggtg |
34915522 |
T |
|
| Q |
304 |
accaacctacattttttactgatcatattgctgtgatccatactcagctgttcaaactgttcaattggtacaaggatgcctatgaccagcaacataattc |
403 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915523 |
accaacctacattttttactgatctgattgctatgatccatactcagctgttcaaactgttcaattggtacaaggatgcctatgaccagcaacataattc |
34915622 |
T |
|
| Q |
404 |
tggtcatctatctgcaagtccatccgagtctagttatgttagcgagaatgtgatcccagctaaagtcccatctcatttggcaagggctgaagcttttaag |
503 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
34915623 |
tggtcatccatctgcaagtccatccgagtctagttatgttagcgagaatgtgatcccagctgaagtcccatctcatttggcaagggctgaagcttttaag |
34915722 |
T |
|
| Q |
504 |
gagcatcttaaactgaaggaatcaatagttnnnnnnnntgagcttgaaaggtacctagatgaggagcgtgcggaggatgtcaactttgacatccttcttt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915723 |
gagcatcttaaactgaaggaatcaatagttaaaaaaaatgagcttgaaaggtacctagatgaggagcgtgcggaggatgtcaactttgacatccttcttt |
34915822 |
T |
|
| Q |
604 |
ggtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgtttt |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915823 |
cgtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgtttt |
34915880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 34914821 - 34915019
Alignment:
| Q |
11 |
tagctgttgcttacttgaagaaaagaattaataacatgggaggtttaatgggtgatggttctttctttcatcttcgttgttgcgctcatatcctaaacct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34914821 |
tagctgttgcttacttgaagaaaagaattaataacatgggaggtttaatgggtgatggttctttctttcatcttcgttgttgcgctcatatcctaaacct |
34914920 |
T |
|
| Q |
111 |
tgtggtgggagatggtttaaaacaaaatgagctctctatttcttcaattagaaatgctgttaggtttgtgagatcgtcaccccaaagatctgcaaaatt |
209 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34914921 |
tgtggtgggggatggtttaaaacaaaatgagctctctatttcttcaattagaaattctgttaggtttgtgagatcgtcaccccaaagatctgcaaaatt |
34915019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 204 - 661
Target Start/End: Complemental strand, 4968920 - 4968463
Alignment:
| Q |
204 |
aaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgcttcaatgacatgtatggtg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4968920 |
aaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagttatgtggagtggtgcttcaatgacatgtatggtg |
4968821 |
T |
|
| Q |
304 |
accaacctacattttttactgatcatattgctgtgatccatactcagctgttcaaactgttcaattggtacaaggatgcctatgaccagcaacataattc |
403 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968820 |
accaacctacattttttactgatctgattgctgtgatccatactcagctattcaaactgttcaattggtacaaggatgcctatgaccagcaacataattc |
4968721 |
T |
|
| Q |
404 |
tggtcatctatctgcaagtccatccgagtctagttatgttagcgagaatgtgatcccagctaaagtcccatctcatttggcaagggctgaagcttttaag |
503 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968720 |
tggtcatccgtctgcaagtccatccgagtctagttatgttagcgagaatgtgatcccagctgaagtcccatctcatttggcaagggctgaagcttttaag |
4968621 |
T |
|
| Q |
504 |
gagcatcttaaactgaaggaatcaatagttnnnnnnnntgagcttgaaaggtacctagatgaggagcgtgcggaggatgtcaactttgacatccttcttt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4968620 |
gagcatcttaaactgaaggaatcaatagttaaaaaaaatgagcttgaaaggtacctagatgaggagcgtgcggaggatgtcaactttgagatccttcttt |
4968521 |
T |
|
| Q |
604 |
ggtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgtttt |
661 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968520 |
ggtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgtttt |
4968463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 4969522 - 4969324
Alignment:
| Q |
11 |
tagctgttgcttacttgaagaaaagaattaataacatgggaggtttaatgggtgatggttctttctttcatcttcgttgttgcgctcatatcctaaacct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4969522 |
tagctgttgcttacttgaagaaaagaattaataacatgggaggtttaatgggtgatggttctttctttcatcttcgttgttgcgctcatatcctaaacct |
4969423 |
T |
|
| Q |
111 |
tgtggtgggagatggtttaaaacaaaatgagctctctatttcttcaattagaaatgctgttaggtttgtgagatcgtcaccccaaagatctgcaaaatt |
209 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4969422 |
tgtggtgggggatggtttaaaacaaaatgagctctctatttcttcaattagaaatgctgttaggtttgtgagatcgtcaccccaaagatctgcaaaatt |
4969324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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