View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_low_52 (Length: 307)
Name: NF0586_low_52
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_52 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 20810407 - 20810626
Alignment:
| Q |
1 |
tgaccaagtctgagcaattaaaagctctgtgtgaaaatcctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20810407 |
tgaccaagtctgagcaattaaaagctctgtgtgaaaatcctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaa |
20810506 |
T |
|
| Q |
101 |
gtcatttaaagttgaccatgtctacaccatgactgaaatggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaacgaccaaaccctaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20810507 |
gtcatttaaagttgaccatgtctacaccatgactgaaatggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaacaaccaaaccctaga |
20810606 |
T |
|
| Q |
201 |
gacaaatttagcgaactctc |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
20810607 |
gacaaatttagcgaactctc |
20810626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 20836762 - 20836981
Alignment:
| Q |
1 |
tgaccaagtctgagcaattaaaagctctgtgtgaaaatcctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20836762 |
tgaccaagtctgagcaattaaaagcactgtgtgcaaatcctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaa |
20836861 |
T |
|
| Q |
101 |
gtcatttaaagttgaccatgtctacaccatgactgaaatggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaacgaccaaaccctaga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
20836862 |
gtcatttaaagttgaccatgtctacaccatgactgaaatggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaacaaccaaaccctaga |
20836961 |
T |
|
| Q |
201 |
gacaaatttagcgaactctc |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
20836962 |
gacaaatttagcgaactctc |
20836981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 20839530 - 20839564
Alignment:
| Q |
221 |
aagctaaatgtttccataatgtaaccctttattag |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
20839530 |
aagctaaatgtttccataatgtaaccctttattag |
20839564 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 31174162 - 31174352
Alignment:
| Q |
12 |
gagcaattaaaagctctgtgtgaaaatcctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaagtcatttaaag |
111 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||| ||| ||| | |
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|
| T |
31174162 |
gagcaattaaaagccctgtgtgcagatcctaagttgttcggttcgggaagtgtattgattattacaactagagatgcacgccttctcaactcacttagtg |
31174261 |
T |
|
| Q |
112 |
ttgaccatgtctacaccatgactgaaatggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaacgaccaaaccctagaga |
202 |
Q |
| |
|
|||||| ||| ||| ||||| |||||||||||| |||| ||||||||||||||| |||| ||||||||||||| |||||| |||||||| |
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|
| T |
31174262 |
acgaccatatcttcacaatgacggaaatggacaaataccagtcccttgaacttttctgttggcatgcttttcaacaaccaaatcctagaga |
31174352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 3400389 - 3400213
Alignment:
| Q |
9 |
tctgagcaattaaaagctctgtgtgaaaatcctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaagtcattta |
108 |
Q |
| |
|
||||||||||||||| ||||||| | ||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||| ||| ||| |
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| T |
3400389 |
tctgagcaattaaaaaacctgtgtgcagatcctaagttgttcggttcgggaagtgtattgattattacaactagagatggacgccttctcaaatcactta |
3400290 |
T |
|
| Q |
109 |
aagttgaccatgtctacaccatgactgaaatggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaa |
185 |
Q |
| |
|
| ||||||| ||| ||| ||||| ||||||||| || |||| ||||||||||||||| |||| |||||||||||| |
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|
| T |
3400289 |
gtggtgaccatatcttcacaatgacagaaatggacgaagaccagtcccttgaacttttctgttggcatgcttttcaa |
3400213 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 8373504 - 8373325
Alignment:
| Q |
1 |
tgaccaagtctgagcaattaaaagctctgtgtgaaaatcctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| || ||||||||||||||||| ||||||||| | ||| |||| | |
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| T |
8373504 |
tgaccaagtctgagcaattaaaagctctgggtggaaatcctaagttgtttggttcaggaagtgtattgattattacaactagagatcgaagccatctcga |
8373405 |
T |
|
| Q |
101 |
gtcatttaaagttgaccatgtctacaccatgactgaaatggacaaacaccaatcccttgaacttttcagttgtcatgcttttc |
183 |
Q |
| |
|
||| ||| || || |||| ||| |||| ||||||||| ||| || | ||||||||||||||||| || |||||||||| |
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|
| T |
8373404 |
ttcactta---gtgcccgcgtcttcacaatgattgaaatggataaaaacgagtcccttgaacttttcagctggcatgcttttc |
8373325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 31060609 - 31060429
Alignment:
| Q |
1 |
tgaccaagtctgagcaattaaaagctctgtgtgaaaatcctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaa |
100 |
Q |
| |
|
||||||||| || | |||||||||| ||||||| |||| |||||| || |||||| | | |||||||||| |||| || |||||| || ||||||||| |
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|
| T |
31060609 |
tgaccaagtttgggaaattaaaagccctgtgtgtaaattgtaagttctttggttcgcgaactgtattgatttttacaaccagagatgaacaccttctcaa |
31060510 |
T |
|
| Q |
101 |
gtcatttaaagttgaccatgtctacaccatgactgaaatggacaaacaccaatcccttgaacttttcagttgtcatgcttt |
181 |
Q |
| |
|
||| ||| | ||||||||||| ||| ||| ||||||| | || |||| || ||||||||||||||||| |||||||| |
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|
| T |
31060509 |
atcacttagtgctgaccatgtcttcacaatggtagaaatggtcgaaaaccagtcacttgaacttttcagttggcatgcttt |
31060429 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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