View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0586_low_55 (Length: 294)
Name: NF0586_low_55
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_55 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 10434252 - 10434506
Alignment:
| Q |
11 |
cacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10434252 |
cacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatg |
10434351 |
T |
|
| Q |
111 |
atcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctcca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10434352 |
atcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctcca |
10434451 |
T |
|
| Q |
211 |
ccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10434452 |
ccttggatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
10434506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 10088647 - 10088397
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
|||||||||||| ||||||| ||||| || | |||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
10088647 |
gaacttgaaggagttctatgtgaaacccttgcgattttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcacacatgatct |
10088548 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||| |||||||||||| |
|
|
| T |
10088547 |
tcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcatcacctgataacttttgttttgagcttgtgcattctccacctt |
10088448 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
10088447 |
gcatcgaagggaatcataactgatttcgctgagcaagtcctcagcatcaaa |
10088397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 10195530 - 10195280
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
|||||||||||| ||||||| ||||| || | |||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
10195530 |
gaacttgaaggagttctatgtgaaacccttgcgtttttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcacacatgatct |
10195431 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||| |||||||||||| |
|
|
| T |
10195430 |
tcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcatcacctgataacttttgttttgagcttgtgcattctccacctt |
10195331 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
10195330 |
gcatcgaagggaatcataactgatttcgctgaacaagtcctcagcatcaaa |
10195280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 10376057 - 10376307
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| | ||||| ||| |||||||||| || |
|
|
| T |
10376057 |
gaacttgaaggtgttctacgagaaactctaccacttttagtttgcagaccaagtatatctttatactgtgcaaagaattgcaggctatcacacatgacct |
10376156 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
10376157 |
tcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttttgagcttttgcattctccacctt |
10376256 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
10376257 |
gcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaa |
10376307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 49 - 265
Target Start/End: Complemental strand, 10077089 - 10076873
Alignment:
| Q |
49 |
ttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactatt |
148 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
10077089 |
ttttagtttgcagaccaagtacatctttattctgtgcaaacaattgcaacctttcacacatgatcttcgtttgagaattgatctctttgtagaagctatt |
10076990 |
T |
|
| Q |
149 |
aaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccaccttgcatcgaagggaatcataactgatttcgttgagc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
10076989 |
aaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcttgtgcattctccaccttgcatcgcagtgaatcgtaactgatttcgttgagc |
10076890 |
T |
|
| Q |
249 |
aagtcctcggcatcaaa |
265 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10076889 |
aagtcctcggcatcaaa |
10076873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 9838718 - 9838468
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||| ||||| ||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
9838718 |
gaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcacacatgatct |
9838619 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
|||| || |||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
9838618 |
tcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccacctt |
9838519 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
9838518 |
gcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaa |
9838468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 9849596 - 9849346
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||| ||||| ||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
9849596 |
gaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcacacatgatct |
9849497 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
|||| || |||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
9849496 |
tcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccacctt |
9849397 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
9849396 |
gcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaa |
9849346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 10580462 - 10580209
Alignment:
| Q |
11 |
cacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatg |
110 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| |||| || ||||||| |||||| | |||||||| | |||||| | ||||| | ||||||||||| |
|
|
| T |
10580462 |
cacagaacttgaaggagttccatgagaaactctagcactcttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatg |
10580363 |
T |
|
| Q |
111 |
atcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctcca |
210 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10580362 |
atcttcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttgtgtattctcca |
10580263 |
T |
|
| Q |
211 |
ccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaa |
264 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
10580262 |
ccttgcatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaa |
10580209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 8861143 - 8860893
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| ||||| |||||||| | ||| |||| ||||||| |||||| |||||||||| ||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
8861143 |
gaacttgaaggggttctacgagaaactttaccaattttagtttgcaaaccaaggatatctttatgttgtgcgaaaatttgcaagctatcacacatgatct |
8861044 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
||||||| |||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
8861043 |
tcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttccacacctgattagttttgtttgcagcttgtgtatcctccacctt |
8860944 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||| | |||||||||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
8860943 |
gcatcgtaatgaatcataactgatttggttgagcaaatcctcagcatcaaa |
8860893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 10889163 - 10888913
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| ||||| |||||||| | ||| |||| ||||||| |||||| |||||||||| |||||||||||||||||||| | ||||||||||| |
|
|
| T |
10889163 |
gaacttgaaggggttctacgagaaactttaccaattttagtttgcaaaccaaggatatctttatgttgtgcaaaaagttgcaagctattacacatgatct |
10889064 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
||||||| |||||||||||||||||||| | ||||||||||| ||||||||| || |||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
10889063 |
tcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagctccacacctgactagttttgtttgtggattgtgtattctccacctt |
10888964 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||| | || |||||||| |||| ||| ||||| ||||| |||||||| |
|
|
| T |
10888963 |
gcatcgcaatgattcataactaatttggttcagcaaatcctccgcatcaaa |
10888913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 11160229 - 11160479
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| ||||| |||||||| | ||| |||| |||||| |||||| |||||||||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
11160229 |
gaacttgaaggggttctacgagaaactttaccaattttactttgcaaaccaaggatatctttatgttgtgcgaaaagttgcaagctatcacacatgatct |
11160328 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
||||||| |||||||||||||| ||||| | ||||||||||| ||||||||| || |||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
11160329 |
tcatttgggaattgatctctctatagaaggtgttaaaaggagaagaaaggaagctccacacctgactagttttgtttgtggattgtgtattctccacctt |
11160428 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||| || || |||||||| |||| || ||||| |||||||||||||| |
|
|
| T |
11160429 |
gcatcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaa |
11160479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 11769091 - 11768841
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||||| ||||||| ||| | |||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
11769091 |
gaacttgaaggtgttctacgagaaactctagcacttttagtttgcaaacctaatatatctttattttgtgcaaaaagttgcaggctttcacacatgatct |
11768992 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
|||| || ||||||||||||| |||| | |||||||| |||||||| |||||| |||||||||||||||||||| ||| ||| | ||||||| ||| |
|
|
| T |
11768991 |
tcatatgggaattgatctctccatagatgtttttaaaaggggatgaaagtaagttccacacctgattagttttgtttctagcttgtttcttctccatctt |
11768892 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||| ||||| |||||||| |||| | ||| || ||||| |||||||| |
|
|
| T |
11768891 |
gcatcggagggagtcataacttatttgatcgagtaaatcctcagcatcaaa |
11768841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 48 - 265
Target Start/End: Original strand, 10364043 - 10364260
Alignment:
| Q |
48 |
cttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactat |
147 |
Q |
| |
|
||||| ||||||| || |||||||||||| ||| | ||||| |||||| ||||||||||||||||||||| || |||||||||||||| ||||| |||| |
|
|
| T |
10364043 |
cttttagtttgcaaacgaagtatatcttttctcttttcaaaatgttgcaggctttcacacatgatcttcatctgggaattgatctctctatagaagctat |
10364142 |
T |
|
| Q |
148 |
taaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccaccttgcatcgaagggaatcataactgatttcgttgag |
247 |
Q |
| |
|
| ||||||||| ||||||||||| ||||||||||| || ||||| ||| ||| || |||||| ||||||| |||||||||||||||||||||| || |
|
|
| T |
10364143 |
tgaaaggagataaaaggaagttccacacctgattacttctgtttccagcttgtttactctccattgtgcatcgcagggaatcataactgatttcgtgaag |
10364242 |
T |
|
| Q |
248 |
caagtcctcggcatcaaa |
265 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
10364243 |
caaatcctcggcatcaaa |
10364260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 11149062 - 11149316
Alignment:
| Q |
11 |
cacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatg |
110 |
Q |
| |
|
||||||||| ||||| ||||||| ||| ||| ||||||| ||||||| |||||| |||||||| || |||||||||| ||||| | | ||||||||| |
|
|
| T |
11149062 |
cacagaactagaaggtgttctatggaaaattctagcacttttagtttgcaaaccaaggatatctttgttttgtgcaaaaatttgcaggttgtcacacatg |
11149161 |
T |
|
| Q |
111 |
atcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctcca |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | ||||||||||| ||||||||| || |||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
11149162 |
gtcttcatttgggaattgatctctctgtagatggtgttaaaaggagaagaaaggaagctccacacctgactagttttgtttgtggattgtgtattctcca |
11149261 |
T |
|
| Q |
211 |
ccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||||||| || || |||||||| |||| || ||||| |||||||||||||| |
|
|
| T |
11149262 |
ccttgcatcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaa |
11149316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 11131234 - 11131488
Alignment:
| Q |
11 |
cacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatg |
110 |
Q |
| |
|
||||||||| ||||| ||||||| ||| ||| ||||||| ||||| | |||||| |||||||| || |||||||||| ||||| | | ||||||||| |
|
|
| T |
11131234 |
cacagaactagaaggtgttctatggaaaattctagcacttttagtttgtaaaccaaggatatctttgttttgtgcaaaaatttgcaggttgtcacacatg |
11131333 |
T |
|
| Q |
111 |
atcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctcca |
210 |
Q |
| |
|
|||| ||||| ||||||||||||| |||| | ||||||||||| |||||||||||| | |||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
11131334 |
gtcttaatttgggaattgatctctccatagatgtttttaaaaggagaagaaaggaagttccagacctgattagttttgtttgcagcttgtgtattctcca |
11131433 |
T |
|
| Q |
211 |
ccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||||||| || || |||||||| |||| || ||||| ||||| |||||||| |
|
|
| T |
11131434 |
ccttgcatcgcagtgactcataactaatttgattcagcaaatcctccgcatcaaa |
11131488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 13289522 - 13289274
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| || ||||||| ||||| |||||| | | ||||||||||| |||| |||| |||||| |||| |
|
|
| T |
13289522 |
gaacttgaaggcgttctaagagaaactctccctctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagctgcagcctttgacacataatct |
13289423 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
||||||| ||||||||||||| |||| | | |||||||||||||||| || |||| | ||||||||||| |||||| ||| ||| | ||||||||||| |
|
|
| T |
13289422 |
tcatttgtgaattgatctctccatagagagttttaaaaggagatgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccacctt |
13289323 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatca |
263 |
Q |
| |
|
||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |
|
|
| T |
13289322 |
acatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatca |
13289274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 13332761 - 13332513
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | || ||||||| ||||| |||||| | | |||||||||||||||| |||| |||||| |||| |
|
|
| T |
13332761 |
gaacttgaaggcgttctaagagaaactctcgcgctcacagtttgcaagccaagaatatctctctgttgtgcaaaaagttgcagcctttgacacataatct |
13332662 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
||||||| ||||||||||||| |||| | | ||||||||||| |||| || |||| | ||||||||||| |||||| ||| ||| | ||||||||||| |
|
|
| T |
13332661 |
tcatttgtgaattgatctctccatagagatttttaaaaggagacgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccacctt |
13332562 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatca |
263 |
Q |
| |
|
||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |
|
|
| T |
13332561 |
acatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatca |
13332513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 263
Target Start/End: Complemental strand, 13160771 - 13160589
Alignment:
| Q |
81 |
tgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgat |
180 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||||||||||| ||||||||||||| |||| | | |||||||||||||||| || |||| | ||||||| |
|
|
| T |
13160771 |
tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgat |
13160672 |
T |
|
| Q |
181 |
tagttttgttttgagcatgtgtattctccaccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatca |
263 |
Q |
| |
|
|||| |||||| ||| ||| | ||||||||| | ||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |
|
|
| T |
13160671 |
tagtcatgttttcagcttgtttcttctccaccgtacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatca |
13160589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 13170888 - 13170640
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| |||| ||||||||||||| || ||||||| ||||| |||||| | | |||||||||||||||| |||| |||||| |||| |
|
|
| T |
13170888 |
gaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctttgacacataatct |
13170789 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
||||||| ||||||||||||| |||| | | ||||||||| |||||| || |||| | ||||||||||| |||||| || ||| | ||||||||||| |
|
|
| T |
13170788 |
tcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgattagtcatgttttcagattgtatcttctccacctt |
13170689 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatca |
263 |
Q |
| |
|
||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |
|
|
| T |
13170688 |
acatcggagggagtcgtaattgatttggttaagcaaatcctcagcatca |
13170640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 13343946 - 13343698
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| |||| ||||||||||||| || ||||||| ||||| |||||| | | |||||||||| |||| |||| |||||| |||| |
|
|
| T |
13343946 |
gaacttgaaggtgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaatctgcagcctttgacacataatct |
13343847 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
||||||| ||||||||||||| |||| | | ||||| ||||| |||| || |||| | ||||||||||| |||||| ||| ||| | ||||||||| | |
|
|
| T |
13343846 |
tcatttgtgaattgatctctccatagagatttttaaacggagacgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccaccgt |
13343747 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatca |
263 |
Q |
| |
|
||||| ||||| || || |||||| ||| ||||| ||||| |||||| |
|
|
| T |
13343746 |
acatcgcagggagtcgtagttgatttggttaagcaaatcctcagcatca |
13343698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 26906754 - 26906504
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||||| ||||||| |||||| |||||||||| |||||||| | ||||| |||||||||||| |||| |
|
|
| T |
26906754 |
gaacttgaaggtgttctacgagaaactctagcacttttagtttgcaaaccaaggatatctttatgttgtgcaaacaattgcaggctttcacacattatct |
26906655 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |
|
|
| T |
26906654 |
tcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcttgtgtattctcgacttt |
26906555 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaa |
265 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
26906554 |
gcatcgcagggaatcataactaatttcgttgagcaagtcctcaacatcaaa |
26906504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 44957921 - 44958172
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| |||| || ||||| ||||||||||| ||||||||||||||||| | ||||||||| |||| |
|
|
| T |
44957921 |
gaacttgaaggtgttctatgagaaactctagcacttttagtttccaaaccaattatatctttatgctgtgcaaaaagttgcagggattcacacataatct |
44958020 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||||||||||||||||||||| | ||||||||||||||||| | | |||||||||||||| || |
|
|
| T |
44958021 |
tcatttgagaattgatctctccatagaagtttttaaaaggagatgaaaggaagttccagacctgattagttttgttggcaacttgtgtattctccacttt |
44958120 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaat |
266 |
Q |
| |
|
||| || ||||||||||| || |||| ||||||||| ||||||||||||||| |
|
|
| T |
44958121 |
gcaacgcagggaatcatagctaatttggttgagcaaatcctcggcatcaaat |
44958172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 48 - 265
Target Start/End: Original strand, 50053 - 50267
Alignment:
| Q |
48 |
cttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactat |
147 |
Q |
| |
|
||||| ||||||| || |||||||||||| | | | |||||||||||| ||||||||||||||||||||| || ||||||||||||| ||| | | |
|
|
| T |
50053 |
cttttagtttgcaaacgaagtatatcttttcttttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatagt---ttt |
50149 |
T |
|
| Q |
148 |
taaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccaccttgcatcgaagggaatcataactgatttcgttgag |
247 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||| | ||||| ||||||| | || |||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
50150 |
taaaagaagatgaaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcgctgag |
50249 |
T |
|
| Q |
248 |
caagtcctcggcatcaaa |
265 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
50250 |
caagtcctcagcatcaaa |
50267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 146151 - 146399
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| |||| ||||||||||||| || ||||||| ||||| |||||| | | |||||||||||||||| |||| |||||| |||| |
|
|
| T |
146151 |
gaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctttgacacataatct |
146250 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
||||||| ||||||||||||| |||| | | |||||||||||||||| || |||| | ||||||||||| |||||| ||| ||| | ||||||||| | |
|
|
| T |
146251 |
tcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccaccgt |
146350 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatca |
263 |
Q |
| |
|
||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |
|
|
| T |
146351 |
acatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatca |
146399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 136100 - 136348
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| |||| ||||||||||||| || ||||||| ||||| |||||| | | |||||||||||||||| |||| |||||| |||| |
|
|
| T |
136100 |
gaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctttgacacataatct |
136199 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt |
214 |
Q |
| |
|
||||||| ||||||||||||| |||| | | ||||||||| |||||| || |||| | ||||||||||| |||||| || ||| | ||||||||||| |
|
|
| T |
136200 |
tcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgattagtcatgttttcagattgtatcttctccacctt |
136299 |
T |
|
| Q |
215 |
gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatca |
263 |
Q |
| |
|
||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |
|
|
| T |
136300 |
acatcggagggagtcgtaattgatttggttaagcaaatcctcagcatca |
136348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 31679945 - 31680199
Alignment:
| Q |
15 |
gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct |
114 |
Q |
| |
|
||||||||||| ||||| || |||| || |||||| ||||||| ||||| |||||||| | |||||||||||||| | |||||| ||| ||| |
|
|
| T |
31679945 |
gaacttgaaggtgttctaagaaaaaccctaccacttacagtttgcaacccaaggatatctttttgttgtgcaaaaagttggagcctttcaatcatactct |
31680044 |
T |
|
| Q |
115 |
tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtg------tattctc |
208 |
Q |
| |
|
||||||| ||||||||||||| || || | | |||||||||||||||||| ||| | |||||| ||| |||||| ||| |||| ||||||| |
|
|
| T |
31680045 |
tcatttgggaattgatctctccatacaagttttgaaaaggagatgaaaggaaattccaaacctgaccagtgatgttttcagcttgtgtattactattctc |
31680144 |
T |
|
| Q |
209 |
caccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatca |
263 |
Q |
| |
|
|||||||| || |||| ||||||||||||| | ||||||||| ||||| |||||| |
|
|
| T |
31680145 |
caccttgcttctaaggcaatcataactgatctggttgagcaaatcctcagcatca |
31680199 |
T |
|
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