View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_low_58 (Length: 285)
Name: NF0586_low_58
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 47 - 276
Target Start/End: Original strand, 33123269 - 33123499
Alignment:
| Q |
47 |
aatacaacaatatatagaaaatttagaaaggnnnnnnntaac-aaagatattttctttacttaaatgaaaatgacaaataggtgaccattttgtcaaacc |
145 |
Q |
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| T |
33123269 |
aatacaacaatatgtagaaaatttagaaaggaaaaaaataacaaaagatattttctttacttaaatgaaaatgacaaataggtgaccattttgtcaaacc |
33123368 |
T |
|
| Q |
146 |
ccatannnnnnnccatggtggcagagattgtcaaaccccatatattcttcattttccatcttctcaaccatgttccctattcccaccccacctgtgatgc |
245 |
Q |
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| T |
33123369 |
ccatatttttttccatggtggcagagattgtcaaaccccatatattcttcattttccatcttctcaaccatattccctattcccaccccacctgtgatgc |
33123468 |
T |
|
| Q |
246 |
ccaaaaatcagacattgttagtaagaataat |
276 |
Q |
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|||||||| |||||||||||||||||||||| |
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| T |
33123469 |
ccaaaaatgagacattgttagtaagaataat |
33123499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 7582341 - 7582268
Alignment:
| Q |
170 |
agattgtcaaaccccatatattcttcattttccatcttctcaaccatgttccctattcccaccccacctgtgat |
243 |
Q |
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||||| |||||||||||||| || | ||||||||||||| ||| ||| ||| ||||||| || ||||||||||| |
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| T |
7582341 |
agattttcaaaccccatatactcatgattttccatcttcacaatcattttctctattcctactccacctgtgat |
7582268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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