View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0586_low_61 (Length: 274)

Name: NF0586_low_61
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0586_low_61
NF0586_low_61
[»] chr8 (3 HSPs)
chr8 (2-240)||(25890961-25891199)
chr8 (192-240)||(18309115-18309163)
chr8 (44-116)||(37718866-37718938)
[»] chr7 (7 HSPs)
chr7 (53-240)||(17506963-17507150)
chr7 (53-240)||(17546064-17546251)
chr7 (2-222)||(15645130-15645350)
chr7 (1-57)||(17504563-17504619)
chr7 (1-57)||(17548595-17548651)
chr7 (41-116)||(551599-551674)
chr7 (43-125)||(45976461-45976543)
[»] chr6 (1 HSPs)
chr6 (41-222)||(7956698-7956879)
[»] chr3 (2 HSPs)
chr3 (2-203)||(14853834-14854035)
chr3 (40-92)||(18381101-18381153)
[»] chr1 (2 HSPs)
chr1 (148-240)||(39584913-39585005)
chr1 (41-120)||(9991071-9991150)
[»] chr5 (2 HSPs)
chr5 (159-209)||(32239704-32239754)
chr5 (159-204)||(17674020-17674065)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 25891199 - 25890961
Alignment:
Q  2 ctcaggaggtaccgcaggttactcaggttgccgacctagtttggcataatcaggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcg 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  25891199 ctcaggaggtaccgcaggttactcaggttgccgacctaatttggcataatcaggttcctctaaaggtgtcaatctttgcatggcgactgctccgtgatcg 25891100  T
Q  102 cctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccgattcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttg 201  Q
    ||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  25891099 cctacctactaaatctaatttggcatcacgtggtatacttaaagtggccgattctttgtgtatttcggggtgtggccaggtggaggatgctcgtcatttg 25891000  T
Q  202 tttctctcgtgtccttgctttagggagatgtggtctctg 240  Q
    |||||||| ||| |||||||| ||||| |||||||||||    
T  25890999 tttctctcttgttcttgctttggggagctgtggtctctg 25890961  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 18309115 - 18309163
Alignment:
Q  192 tagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 240  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  18309115 tagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 18309163  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 37718938 - 37718866
Alignment:
Q  44 ggcataatcaggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatc 116  Q
    ||||||| |||||||   ||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |||||    
T  37718938 ggcataaacaggttcccttaaaggtgtcaatttttgcttggcggctgctccgtgatcgcttacctaccaaatc 37718866  T

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Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 17506963 - 17507150
Alignment:
Q  53 aggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccga 152  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  17506963 aggttcctctaaaggtgtcaatatttgcgtggcgactgctccgtgatcgcatacctactaaatctaatctggcatcacgtggtatacttaatgtgaccga 17507062  T
Q  153 ttcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17507063 ttcttggtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 17507150  T

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Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 17546251 - 17546064
Alignment:
Q  53 aggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccga 152  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  17546251 aggttcctctaaaggtgtcaatatttgcgtggcgactgctccgtgatcgcatacctactaaatctaatctggcatcacgtggtatacttaatgtgaccga 17546152  T
Q  153 ttcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17546151 ttcttggtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 17546064  T

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Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 15645350 - 15645130
Alignment:
Q  2 ctcaggaggtaccgcaggttactcaggttgccgacctagtttggcataatcaggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcg 101  Q
    |||| ||||||| |||||||||||||| |   || ||| |||||||||| ||| |||  |||||||||||| ||||||| ||||| ||||||||||||      
T  15645350 ctcacgaggtactgcaggttactcaggatttagatctaatttggcataaacagattccactaaaggtgtcagtctttgcttggcggctgctccgtgatta 15645251  T
Q  102 cctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccgattcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttg 201  Q
    ||| ||||||||||||||  ||||||||||||||||  ||||||||  || ||||  |||| |||||||||||||||||||||||||||||  |||||||    
T  15645250 ccttcctactaaatctaacttggcatcacgtggtataattaatgtggacgcttctatgtgtgtttcggggtgtggccaggtggaggatgctcatcatttg 15645151  T
Q  202 tttctctcgtgtccttgcttt 222  Q
    ||| |||| ||||||||||||    
T  15645150 tttttctcttgtccttgcttt 15645130  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 17504563 - 17504619
Alignment:
Q  1 tctcaggaggtaccgcaggttactcaggttgccgacctagtttggcataatcaggtt 57  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||    
T  17504563 tctcaggaggtaccgcaggttactcaggttgacgatctaatttggcataatcaggtt 17504619  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17548651 - 17548595
Alignment:
Q  1 tctcaggaggtaccgcaggttactcaggttgccgacctagtttggcataatcaggtt 57  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||    
T  17548651 tctcaggaggtaccgcaggttactcaggttgacgatctaatttggcataatcaggtt 17548595  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 551599 - 551674
Alignment:
Q  41 tttggcataatcaggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatc 116  Q
    |||||||||| ||||||| | ||||||||||||| ||||| ||||| ||| ||||||||||| | ||||| |||||    
T  551599 tttggcataaacaggttcctttaaaggtgtcaatttttgcttggcggctgatccgtgatcgcttgcctaccaaatc 551674  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 45976461 - 45976543
Alignment:
Q  43 tggcataatcaggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggc 125  Q
    ||||||||  ||||| || |||||||||| || ||||| ||||| |||||  |||||||||| ||||||||||||||| ||||    
T  45976461 tggcataaataggtttttttaaaggtgtctatttttgcttggcggctgctttgtgatcgccttcctactaaatctaatttggc 45976543  T

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Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 41 - 222
Target Start/End: Original strand, 7956698 - 7956879
Alignment:
Q  41 tttggcataatcaggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattct 140  Q
    |||||||||| |||||||  |||||||||||| ||||||| |||||  |||||||||||||||| ||||||||||||||  ||||||| ||||||||  |    
T  7956698 tttggcataaacaggttcccctaaaggtgtcagtctttgcttggcggttgctccgtgatcgccttcctactaaatctaacttggcatctcgtggtataat 7956797  T
Q  141 taatgtgaccgattcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgcttt 222  Q
    |||||||  || ||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  7956798 taatgtggacgcttctatgtgtgtttcggggtgtggccaggtggaggatgctcgtcatttgtttctctcatgtccttgcttt 7956879  T

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Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 14854035 - 14853834
Alignment:
Q  2 ctcaggaggtaccgcaggttactcaggttgccgacctagtttggcataatcaggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcg 101  Q
    ||||||||||||||||||||||||||| || |||  |  |||||||||| |||||||| |||||||||||| ||||||| ||||| ||||||||||||||    
T  14854035 ctcaggaggtaccgcaggttactcaggatgtcgatttgatttggcataaacaggttctcctaaaggtgtcagtctttgcttggcggctgctccgtgatcg 14853936  T
Q  102 cctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccgattcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttg 201  Q
     |  ||||||||||||||  ||||||||||||||||  ||||||||   | ||||  |||| ||||||||||||| ||||||||||||||| ||||||||    
T  14853935 tcctcctactaaatctaacttggcatcacgtggtataattaatgtggatgcttctatgtgtgtttcggggtgtggtcaggtggaggatgctcgtcatttg 14853836  T
Q  202 tt 203  Q
    ||    
T  14853835 tt 14853834  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 18381153 - 18381101
Alignment:
Q  40 gtttggcataatcaggttcttctaaaggtgtcaatctttgcgtggcgactgct 92  Q
    ||||||||||| |||||||  |||||||| || ||||||||||||||| ||||    
T  18381153 gtttggcataagcaggttcccctaaaggtttctatctttgcgtggcgaatgct 18381101  T

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Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 39585005 - 39584913
Alignment:
Q  148 accgattcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 240  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  39585005 accgattctttgtgtattttggggtgtggccaggtggaggatgctcgtcatttgtttctctcgtgtccttgctttagggagttgtggtctctg 39584913  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 9991150 - 9991071
Alignment:
Q  41 tttggcataatcaggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaat 120  Q
    |||||||||| |||||||  || |||||| | || ||||| ||||| ||||| ||||||| ||| |||||||||||||||    
T  9991150 tttggcataaacaggttccgcttaaggtgcctatttttgcttggcggctgcttcgtgatcaccttcctactaaatctaat 9991071  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 32239754 - 32239704
Alignment:
Q  159 gtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctc 209  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  32239754 gtgtgtttcggggtgtggtcaggtggaggatgctcgtcatttgtttctctc 32239704  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 17674065 - 17674020
Alignment:
Q  159 gtgtatttcggggtgtggccaggtggaggatgctagtcatttgttt 204  Q
    |||| |||| || ||||||||||||||||||||| |||||||||||    
T  17674065 gtgtgtttctggttgtggccaggtggaggatgctcgtcatttgttt 17674020  T

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