View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0586_low_62 (Length: 272)

Name: NF0586_low_62
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0586_low_62
NF0586_low_62
[»] chr8 (8 HSPs)
chr8 (9-244)||(33168231-33168466)
chr8 (2-244)||(17315224-17315466)
chr8 (2-244)||(17337135-17337377)
chr8 (75-210)||(13539710-13539845)
chr8 (75-210)||(13684629-13684764)
chr8 (17-159)||(12521301-12521439)
chr8 (15-200)||(27933159-27933343)
chr8 (48-121)||(9798390-9798462)
[»] chr3 (13 HSPs)
chr3 (7-202)||(12881037-12881234)
chr3 (14-244)||(31139299-31139518)
chr3 (17-225)||(6013933-6014143)
chr3 (33-203)||(4863818-4863996)
chr3 (38-221)||(11271414-11271596)
chr3 (6-128)||(6020263-6020385)
chr3 (156-209)||(8890630-8890683)
chr3 (174-229)||(4847019-4847074)
chr3 (17-92)||(6018132-6018207)
chr3 (48-119)||(13833019-13833089)
chr3 (173-221)||(4284996-4285044)
chr3 (206-244)||(8890730-8890768)
chr3 (169-225)||(6018286-6018342)
[»] chr2 (5 HSPs)
chr2 (1-214)||(8172789-8173001)
chr2 (38-244)||(24185203-24185409)
chr2 (65-159)||(16917812-16917904)
chr2 (57-148)||(31603483-31603575)
chr2 (57-156)||(21511811-21511910)
[»] chr6 (1 HSPs)
chr6 (23-210)||(28973920-28974107)
[»] chr4 (6 HSPs)
chr4 (39-244)||(15154457-15154662)
chr4 (21-235)||(31371615-31371833)
chr4 (57-221)||(10520324-10520488)
chr4 (52-215)||(15048073-15048236)
chr4 (52-215)||(15106188-15106351)
chr4 (173-216)||(53000317-53000360)
[»] chr1 (6 HSPs)
chr1 (17-210)||(15918013-15918206)
chr1 (16-244)||(28553360-28553591)
chr1 (27-244)||(37627433-37627645)
chr1 (9-160)||(12788678-12788829)
chr1 (22-116)||(45962741-45962834)
chr1 (45-148)||(8236350-8236453)
[»] chr7 (5 HSPs)
chr7 (8-244)||(10234630-10234869)
chr7 (58-244)||(9046272-9046459)
chr7 (173-238)||(23395001-23395066)
chr7 (38-121)||(6847746-6847828)
chr7 (56-109)||(14545537-14545590)
[»] chr5 (2 HSPs)
chr5 (46-184)||(12685682-12685817)
chr5 (40-244)||(26266452-26266657)
[»] scaffold0003 (1 HSPs)
scaffold0003 (7-123)||(356806-356928)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 33168466 - 33168231
Alignment:
Q  9 tcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttgg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33168466 tcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctcgtgattgttgg 33168367  T
Q  109 aataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33168366 aataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaa 33168267  T
Q  209 atatcaaatgaagaaccgagaagtgaagttagatat 244  Q
    |||||||| |||||||||||||||||||||||||||    
T  33168266 atatcaaacgaagaaccgagaagtgaagttagatat 33168231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 17315466 - 17315224
Alignment:
Q  2 ttttcagtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtga 101  Q
    |||||||| || |||||| ||| ||||   ||||| || |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| | ||    
T  17315466 ttttcagttatttattttcatgcctttatatttcatgtatttatattttaatcccttgtctactatgatcatgagtgagtaaactattctagtcttgaga 17315367  T
Q  102 ttgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaatttt 201  Q
    |||||| | ||||| |||||||||||| || |||||| || | || ||||||||||||   ||| | |||  ||||||||||||||  || ||||  ||     
T  17315366 ttgttgaactaatcaaatgattgaatcctactcaacccaaatttagaatctattttattttaattctttttataatctaatctcatcatttttaagctta 17315267  T
Q  202 ataacaaatatcaaatgaagaaccgagaagtgaagttagatat 244  Q
    ||||||||||||||| |||| || || | |||||||| |||||    
T  17315266 ataacaaatatcaaacgaaggactgaaaggtgaagtttgatat 17315224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 17337377 - 17337135
Alignment:
Q  2 ttttcagtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtga 101  Q
    |||||||| || |||||| ||| ||||   ||||| || |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| | ||    
T  17337377 ttttcagttatttattttcatgcctttatatttcatgtatttatattttaatcccttgtctactatgatcatgagtgagtaaactattctagtcttgaga 17337278  T
Q  102 ttgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaatttt 201  Q
    |||||| | ||||| |||||||||||| || |||||| || | || ||||||||||||   ||| | |||  ||||||| ||||||  || ||||  ||     
T  17337277 ttgttgaactaatcaaatgattgaatcctactcaacccaaatttagaatctattttattttaattcttttaataatctactctcatcatttttaagctta 17337178  T
Q  202 ataacaaatatcaaatgaagaaccgagaagtgaagttagatat 244  Q
    ||||||||||||||| |||| ||||| | |||||||| |||||    
T  17337177 ataacaaatatcaaacgaaggaccgaaatgtgaagtttgatat 17337135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 210
Target Start/End: Complemental strand, 13539845 - 13539710
Alignment:
Q  75 agtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcct 174  Q
    |||||||| | || || ||||| | |||| |||||||||||||||||||||||| || |||||  |||| || | | |||||||| | ||| | ||| ||    
T  13539845 agtgagtagatttatccagtcttgagattattggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttct 13539746  T
Q  175 aatctaatctcattgttgttaaattttataacaaat 210  Q
    |||||| |||||| |||||| |||||||||||||||    
T  13539745 aatctactctcatcgttgtttaattttataacaaat 13539710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 13684629 - 13684764
Alignment:
Q  75 agtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcct 174  Q
    |||||||| | || || ||||| | |||| |||||||||||||||||||||||| || |||||  |||| || | | |||||||| | ||| | ||| ||    
T  13684629 agtgagtagatttatccagtcttgagattattggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttct 13684728  T
Q  175 aatctaatctcattgttgttaaattttataacaaat 210  Q
    |||||| |||||| |||||| |||||||||||||||    
T  13684729 aatctactctcatcgttgtttaattttataacaaat 13684764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 12521301 - 12521439
Alignment:
Q  17 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 116  Q
    ||||||||| |||||||||| |||||||| || |||||  |||| || |||||||||  ||||||  |||||||    |||||| ||||||||||||| |    
T  12521301 ttttatgtcatttactttcatgtctttatcttataatcctttgtatattatgatcatgtgtgagtggacttttc----ctagtg-ttgttggaataattt 12521395  T
Q  117 aatgattgaatcataatcaa-cctaagtctaaaatctattttat 159  Q
    |||||| || || ||||||| || ||||||| ||||||||||||    
T  12521396 aatgatggagtcctaatcaatcccaagtctagaatctattttat 12521439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 27933159 - 27933343
Alignment:
Q  15 atttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataat 114  Q
    ||||||||| ||| || ||||| |||| | || ||||||| ||||||||| ||||| || ||||| || ||||||||| | |   |||||||| ||||||    
T  27933159 atttttatg-cttctattttcatgtctctttactttaatcccttgtctacaatgatgatgagtgaatatacttttctacttttaggattgttgaaataat 27933257  T
Q  115 ctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattt 200  Q
    ||| |||||||||| || |||| | |||| || | ||||||||||| |||    ||| |||||||| |||||||||  ||||||||    
T  27933258 ctattgattgaatcctattcaaaccaagtttagactctattttatatgaaattgttttctaatctattctcattgtctttaaattt 27933343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 9798462 - 9798390
Alignment:
Q  48 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatga 121  Q
    |||||||| ||||||||||| |||||||| ||||| ||  ||||||||| | |||||| |||||| ||||||||    
T  9798462 tttaatcttttgtctactataatcattagagagtagac-cttctagtcttgggattgtcggaatagtctaatga 9798390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 12881037 - 12881234
Alignment:
Q  7 agtcatctatttttatgtcttttactttcaagtctttata--ttttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattg 104  Q
    |||||| || ||||||| |||||||||||| |||||||||  |||||||| ||||||||||||||||||  ||||||| ||||||||  ||| | |||||    
T  12881037 agtcatttacttttatgccttttactttcatgtctttatatattttaatcccttgtctactatgatcatgggtgagtagacttttcttatcttgggattg 12881136  T
Q  105 ttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaatttta 202  Q
    | |||||||| ||||||||||||| ||||||||| || | || |||||||||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  12881137 taggaataatttaatgattgaatcttaatcaacccaaatttagaatctattttataagaatccattttctaatataatctcatcattgttaaatttta 12881234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 31139518 - 31139299
Alignment:
Q  14 tatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataa 113  Q
    |||||||||| |||||| |||||  |||||| |||||||||  ||||||||| | ||||| |||||||| |||||| ||||||         ||||||||    
T  31139518 tatttttatgccttttattttcatatctttacattttaatcctttgtctacttttatcatgagtgagtagacttttatagtct---------tggaataa 31139428  T
Q  114 tctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatc 213  Q
    | |||||||||||||||| | |||| |||| |||||| |  ||||||| ||  ||||| ||||| |||| ||||||||||||||| ||||||||||||||    
T  31139427 tttaatgattgaatcatatttaacccaagtataaaatgt--tttataaaaaatcattttctaatataatttcattgttgttaaatattataacaaatatc 31139330  T
Q  214 aaatgaagaaccgagaagtgaagttagatat 244  Q
    ||| |||||| ||||| ||||| || |||||    
T  31139329 aaacgaagaatcgagatgtgaactttgatat 31139299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 6013933 - 6014143
Alignment:
Q  17 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 116  Q
    |||||||| |||||||||||   ||||||| ||||||||||||||||||||||| || ||||||| |||| ||||| ||| | |||||| || ||||||     
T  6013933 ttttatgtgttttactttcattcctttataatttaatctcttgtctactatgattatgagtgagtgaactcttctattcttgggattgtggggataatca 6014032  T
Q  117 aatgattgaat-cat-aatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatca 214  Q
    ||| ||| ||| |||  || |||| ||||||| | |||||||| || |||    ||| |||||||| |||||||||| |||||||| ||| | ||||| |    
T  6014033 aataatttaatccatgtataaacccaagtctagactctattttctatgaaattgtttgctaatctattctcattgtttttaaatttaatatctaatatta 6014132  T
Q  215 aatgaagaacc 225  Q
    |||||||||||    
T  6014133 aatgaagaacc 6014143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 203
Target Start/End: Original strand, 4863818 - 4863996
Alignment:
Q  33 ttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaac----ttttctagtctagtgattgttggaataatc----taatgattg 124  Q
    |||| ||||||||||||||||| | |||||| |||||||||  || |||||||    | ||||||||| |  |||||| ||||||||    |||||||||    
T  4863818 ttcatgtctttatattttaatcacatgtctattatgatcatatgttagtaaacaaactattctagtcttggaattgttagaataatcaatctaatgattg 4863917  T
Q  125 aatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttat 203  Q
    |||  ||||||||| ||||||| | ||||||||||||||||||||||  ||||||||| |||| |||  ||||||||||    
T  4863918 aatgttaatcaacccaagtctagactctattttataagaatccattttataatctaatatcatcgttactaaattttat 4863996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 11271414 - 11271596
Alignment:
Q  38 gtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaac 137  Q
    ||||||||| |||| |  |||||||||||||||||| |||||||| ||||| |||||||   | |||||||| |||| |||||||||| || || |||||    
T  11271414 gtctttatactttagtgccttgtctactatgatcatgagtgagtagacttt-ctagtcttaggtttgttggactaatataatgattgactcctattcaac 11271512  T
Q  138 ctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 221  Q
      ||||||| ||||||||||||   ||| | ||| |||||||||||||||  || ||||  || ||||||||||||||| ||||    
T  11271513 tgaagtctagaatctattttatttaaattctttttctaatctaatctcatcatttttaagcttaataacaaatatcaaacgaag 11271596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 6020263 - 6020385
Alignment:
Q  6 cagtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgt 105  Q
    ||||||| || |||||||| ||||| ||||| | ||||||| |||||||| || |||||||||||||| |||||||||| | ||||| ||| | ||||||    
T  6020263 cagtcatttacttttatgtgttttaatttcatgcctttataatttaatctattctctactatgatcatgagtgagtaaattcttctattcttgggattgt 6020362  T
Q  106 tggaataatctaatgattgaatc 128  Q
     || |||||| ||| ||| ||||    
T  6020363 agggataatcaaataatttaatc 6020385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 8890630 - 8890683
Alignment:
Q  156 ttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaa 209  Q
    |||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  8890630 ttataaaaattcattttctaatctaatctcatcgttgttaaattttataacaaa 8890683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 4847019 - 4847074
Alignment:
Q  174 taatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgaga 229  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||| ||||||||||||    
T  4847019 taatctaatatcattgttattaaattttatagcaagtatcaaacgaagaaccgaga 4847074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 6018132 - 6018207
Alignment:
Q  17 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttcta 92  Q
    |||||||| |||||||||||   ||||||| |||||| | |||||||||||||| || |||||||||||| |||||    
T  6018132 ttttatgtgttttactttcattcctttataatttaatatattgtctactatgattatgagtgagtaaactcttcta 6018207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 13833089 - 13833019
Alignment:
Q  48 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaat 119  Q
    |||||||| ||||||||||||||||| |||||||| || ||| |||| | ||||||||||||||| ||||||    
T  13833089 tttaatcttttgtctactatgatcatgagtgagtagaccttt-tagttttgtgattgttggaatagtctaat 13833019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 4284996 - 4285044
Alignment:
Q  173 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 221  Q
    ||||||||||||||||||| ||||||||||||  |||||| ||||||||    
T  4284996 ctaatctaatctcattgttattaaattttatataaaatattaaatgaag 4285044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 8890730 - 8890768
Alignment:
Q  206 caaatatcaaatgaagaaccgagaagtgaagttagatat 244  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  8890730 caaatatcaaacgaagaaccgagaagtgaagtttgatat 8890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 6018286 - 6018342
Alignment:
Q  169 tttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaacc 225  Q
    ||| |||||||| |||||||||| |||||||| ||| | ||||| ||||||||||||    
T  6018286 tttgctaatctattctcattgtttttaaatttaatatctaatattaaatgaagaacc 6018342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8173001 - 8172789
Alignment:
Q  1 cttttcagtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtg 100  Q
    |||||||||  | ||| ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||  || | |  |||||| ||||||   |    
T  8173001 cttttcagttgtttatctttatgtcttttactttcatgtgtttatattttaatctcttgtctgctatgatcatgtgtaaattgacttttttagtctttgg 8172902  T
Q  101 attgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattt 200  Q
    |||||| |||||||||||||||| |||||||||||||  ||||||||| ||||||||||| |||| ||||| ||||| |||||||| |||||||||| ||    
T  8172901 attgttagaataatctaatgattaaatcataatcaactcaagtctaaactctattttataggaattcattttctaatataatctcagtgttgttaaa-tt 8172803  T
Q  201 tataacaaatatca 214  Q
    | ||||||||||||    
T  8172802 tgtaacaaatatca 8172789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 38 - 244
Target Start/End: Complemental strand, 24185409 - 24185203
Alignment:
Q  38 gtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaac 137  Q
    ||||||| |||||||||  ||||||||||||||||| |||||||| ||||||||||||| | ||||| |||||||||||||||||| |||  ||  ||||    
T  24185409 gtctttacattttaatccattgtctactatgatcataagtgagtagacttttctagtcttgagattgatggaataatctaatgatttaattctatccaac 24185310  T
Q  138 ctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagt 237  Q
    | |||||||  |  | ||| |||| |   ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||   ||| |||||||    
T  24185309 ccaagtctaggacatgtttgataaaagatcattttctaatctaatctcatcgttgttaaattttataacaaatatcaaacgaagaatttagatgtgaagt 24185210  T
Q  238 tagatat 244  Q
    | |||||    
T  24185209 ttgatat 24185203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 16917812 - 16917904
Alignment:
Q  65 tatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttat 159  Q
    ||||||||| | |||||| |||||| |||||| | ||||||| || ||||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  16917812 tatgatcatgaatgagtagactttt-tagtcttgggattgttagactaatctaatgattgaatcatattcaacc-aagtctagaatctattttat 16917904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 31603575 - 31603483
Alignment:
Q  57 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatc-aacctaagtctaaa 148  Q
    |||||||||||||||||  ||||||| | ||||||||||| |  ||||||  |||||||||||||| ||||| ||||| |||| |||||||||    
T  31603575 ttgtctactatgatcatatgtgagtagatttttctagtcttggaattgttaaaataatctaatgatggaatcctaatcaaacccaagtctaaa 31603483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 21511910 - 21511811
Alignment:
Q  57 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaa-atctatt 155  Q
    |||||||||||||| || |||||||| ||  || |||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||||| |||||||    
T  21511910 ttgtctactatgataatgagtgagtagaccatt-tagtcttgggattgttggaatagtctaatgacttaatcctattcaaaccaagtctaaatatctatt 21511812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 28973920 - 28974107
Alignment:
Q  23 gtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgat 122  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||||| ||  |||| |  ||||||||| ||| | ||||||||||||||||||||||     
T  28973920 gtcttttactttcatgtctttatattttaatcccttttctactatgattatgtgtgaatggacttttctaatctcgagattgttggaataatctaatgac 28974019  T
Q  123 tgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaat 210  Q
    | |||| ||||||||| ||||    | |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  28974020 tcaatcctaatcaacccaagttctgactctattttataagaatccatttgctaatctaatctcatcgttattaaattttataacaaat 28974107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 39 - 244
Target Start/End: Original strand, 15154457 - 15154662
Alignment:
Q  39 tctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacc 138  Q
    |||||| ||||||||| ||||||||||| |||||| |||||||| ||| || |||||| | |||||||||| |||||||||||||||||| || ||||||    
T  15154457 tctttacattttaatcccttgtctactacgatcatgagtgagtatactcttttagtcttgggattgttggactaatctaatgattgaatcctattcaacc 15154556  T
Q  139 taagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagtt 238  Q
    |||||||| | || ||||||| | ||| ||||| ||||||||||||| |  ||||| ||| | ||||||||||||||||||   ||||| | ||||||||    
T  15154557 taagtctagactcaattttattaaaattcattttctaatctaatctcgtcattgtttaatctaataacaaatatcaaatgagagaccgaaatgtgaagtt 15154656  T
Q  239 agatat 244  Q
     |||||    
T  15154657 tgatat 15154662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 31371833 - 31371615
Alignment:
Q  21 atgtcttttactttcaagtctttatattt-taatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaat 119  Q
    |||||||||||||||| |||||||||||| |||||  ||||| |||||||||||  ||||||| ||| | ||||||| | || ||||| |||||||||||    
T  31371833 atgtcttttactttcatgtctttatatttataatccattgtcaactatgatcatgtgtgagtagactct-ctagtcttgagaatgttgaaataatctaat 31371735  T
Q  120 gattgaatcataatcaac-ctaagtctaaaatctattttataag---aatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 215  Q
    ||||||| | |||||||| | ||||||||| |||||||| ||||   ||||  ||| |||||||||||||||  || |||||||||||||||||||| ||    
T  31371734 gattgaaccctaatcaacgccaagtctaaactctattttgtaagctgaatctcttttctaatctaatctcatcattattaaattttataacaaatatgaa 31371635  T
Q  216 atgaagaaccgagaagtgaa 235  Q
    | |||||||| ||| |||||    
T  31371634 acgaagaacctagatgtgaa 31371615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 10520488 - 10520324
Alignment:
Q  57 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattt 156  Q
    ||||||||||||||||   ||||||| |||||| || |||   |||||||| ||||||||||||||  |||| ||||||||  |||| || | |||||||    
T  10520488 ttgtctactatgatcacacgtgagtagacttttatactctttggattgttgaaataatctaatgatgaaatcttaatcaactcaagtttagactctattt 10520389  T
Q  157 tataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 221  Q
    | || ||||  || |  |||||||||||||||||| || ||||||| | ||||||||||| ||||    
T  10520388 tgtatgaatttatgttgtaatctaatctcattgttattgaattttaaatcaaatatcaaacgaag 10520324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 215
Target Start/End: Complemental strand, 15048236 - 15048073
Alignment:
Q  52 atctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatc 151  Q
    ||||||||||||| || ||||| |||||||| ||||| ||||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||| || |    
T  15048236 atctcttgtctacaatcatcatgagtgagtatacttt-ctagtcttgggattgttggaatagtctaatgactaaatcctattcaaaccaagtctagaacc 15048138  T
Q  152 -tattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 215  Q
     ||||||||   ||| | ||| |||||||||||||||  || |||| | ||||| ||||||||||    
T  15048137 ttattttatttaaattctttttctaatctaatctcataatttttaagtcttatatcaaatatcaa 15048073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 15106188 - 15106351
Alignment:
Q  52 atctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatc 151  Q
    ||||||||||||| || ||||| |||||||| ||||| ||||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||| || |    
T  15106188 atctcttgtctacaatcatcatgagtgagtatacttt-ctagtcttgggattgttggaatagtctaatgactaaatcctattcaaaccaagtctagaacc 15106286  T
Q  152 -tattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 215  Q
     ||||||||   ||| | ||| |||||||||||||||  || |||| | ||||| ||||||||||    
T  15106287 ttattttatttaaattctttttctaatctaatctcataatttttaagtcttatatcaaatatcaa 15106351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 53000360 - 53000317
Alignment:
Q  173 ctaatctaatctcattgttgttaaattttataacaaatatcaaa 216  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||    
T  53000360 ctaatctaatctcatcgttattaaattttatatcaaatatcaaa 53000317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 15918013 - 15918206
Alignment:
Q  17 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 116  Q
    |||||||||||||||||||| || ||||||||||||| |||| |||||||||||| | | |||||| ||||| || || | | |||||||||||||||||    
T  15918013 ttttatgtcttttactttcacgtgtttatattttaatatcttatctactatgatcttgattgagtagactttccttgtattgggattgttggaataatct 15918112  T
Q  117 aatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaat 210  Q
    |||||||||||| ||||||||  ||||||| |  |||||||| | ||||  || |  |||| ||||||||| ||| |||||||||||| |||||    
T  15918113 aatgattgaatcctaatcaactcaagtctagaccctattttacatgaatttatgttttaatttaatctcatcgttattaaattttatatcaaat 15918206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 28553360 - 28553591
Alignment:
Q  16 tttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatc 115  Q
    |||||||| |||||| ||||| |||| | || |||||||  | || ||| | |||||| ||||| || | ||||||||||| |  |||||| ||||||||    
T  28553360 tttttatgccttttattttcatgtctctttactttaatccttagtttacaaggatcatgagtgaatagatttttctagtcttgatattgttagaataatc 28553459  T
Q  116 taatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattt---tataacaaatat 212  Q
    | |||||||||||||| |||||| ||||||| | |||||||||| | ||| ||||| |||||||||||||||||||||| | |||   ||||||||||||    
T  28553460 tgatgattgaatcatattcaacccaagtctagactctattttattaaaattcattttctaatctaatctcattgttgtttagtttatatataacaaatat 28553559  T
Q  213 caaatgaagaaccgagaagtgaagttagatat 244  Q
    |||| |||| | ||| | |||||||| |||||    
T  28553560 caaacgaaggatcgaaaggtgaagtttgatat 28553591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 37627433 - 37627645
Alignment:
Q  27 tttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaa 126  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||  ||||||| || ||||||||||   ||||||||||||||||||| |||||||    
T  37627433 tttactttcatgtctttatcttttaatctcttgtctactatgatcatgtgtgagtagacatttctagtcttaagattgttggaataatctaaggattgaa 37627532  T
Q  127 tcataatc-aacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaacc 225  Q
    |  ||||| |||| ||||||| |     |||||| |   | | ||  ||||||||||||||| ||| |||||||||||| ||||||||||| |||| ||     
T  37627533 ttctaatcaaaccaaagtctaga----tttttatgaacttgcgtt--ctaatctaatctcatcgttattaaattttatatcaaatatcaaacgaagtact 37627626  T
Q  226 gagaagtgaagttagatat 244  Q
    |||| ||||| || |||||    
T  37627627 gagaggtgaaatttgatat 37627645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 12788678 - 12788829
Alignment:
Q  9 tcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttgg 108  Q
    |||| ||||||||||  ||||| || || |||| | || ||||||| ||||||||| || ||||| |||||||| | ||||||||||| | ||||||||     
T  12788678 tcatttatttttatgcattttatttccatgtctctttactttaatcccttgtctacaattatcatgagtgagtagaattttctagtcttgggattgttga 12788777  T
Q  109 aataatctaatgattgaatcataatcaacctaagtctaaaatctattttata 160  Q
    ||||| |||||||| ||| | || |||||| |||| || | |||||||||||    
T  12788778 aataagctaatgatggaaccctattcaacccaagtatacactctattttata 12788829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 45962741 - 45962834
Alignment:
Q  22 tgtcttttactttcaagtcttta-tattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 116  Q
    ||||||||||||||| || |||| ||||||||||||||||| |||| |||||| | |||||| |||||||||   | | |||||||||||||||||    
T  45962741 tgtcttttactttcatgtttttactattttaatctcttgtcaactaagatcatgactgagtagacttttcta--attgggattgttggaataatct 45962834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 8236350 - 8236453
Alignment:
Q  45 tattttaatctcttgtctactatgatcattagtgagtaaacttttctagtc-tagtgattgttggaataatctaatgattgaatcataatcaacctaagt 143  Q
    |||||||||||  |||||||||||||||| |||||||| || ||| ||||| | | ||||||||||||| |||||||| | |||| || |||| | ||||    
T  8236350 tattttaatcttatgtctactatgatcatgagtgagtagaccttt-tagtctttgggattgttggaatagtctaatgacttaatcttattcaaaccaagt 8236448  T
Q  144 ctaaa 148  Q
    |||||    
T  8236449 ctaaa 8236453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 10234630 - 10234869
Alignment:
Q  8 gtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctact--atgatcattagtgagtaaacttttctagtctagtgattgt 105  Q
    ||||| || ||||||||| |||||||||| |  ||||| || ||||| ||||||||||  || |||||   |||||| || ||| |||||| ||||||||    
T  10234630 gtcatttacttttatgtcatttactttcatgcatttattttctaatcccttgtctactctataatcatgtatgagtagacctttttagtcttgtgattgt 10234729  T
Q  106 tggaataatctaatgattgaatcataatcaa-cctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttata 204  Q
    || |||||||||||||||||||| |||| || || ||||||||| ||||||||||| ||||  |  | |||||||||||  ||||||||||||||| |||    
T  10234730 tgaaataatctaatgattgaatcctaatgaaacccaagtctaaactctattttatatgaatttacgttctaatctaatcgtattgttgttaaatttaata 10234829  T
Q  205 acaaatatcaaatgaagaaccgagaagtgaagttagatat 244  Q
     ||||||||||| |||| ||||||  |||||||| |||||    
T  10234830 tcaaatatcaaacgaagtaccgagcggtgaagtttgatat 10234869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 244
Target Start/End: Original strand, 9046272 - 9046459
Alignment:
Q  58 tgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctatttt 157  Q
    ||||||| |||||||| |||||||| |||| ||||| || |  ||||||||||| || |||||||  |||| || | || | || | |||| ||||||||    
T  9046272 tgtctacgatgatcatgagtgagtagacttgtctagccttggaattgttggaatgatataatgatccaatcctatttaaaccaaatttaaattctatttt 9046371  T
Q  158 ataagaatccatttcctaatctaatctcattg-ttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 244  Q
    || | |||   ||| ||||||||||||||| | || ||||   ||||| ||||||||||| |||| ||||| |||||||||| |||||    
T  9046372 attacaatttgttttctaatctaatctcatagttttttaagccttatatcaaatatcaaacgaaggaccgaaaagtgaagtttgatat 9046459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 23395001 - 23395066
Alignment:
Q  173 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagtt 238  Q
    |||||||| |||||| ||| |||||||| ||| | ||||| |||||||||||||| ||||||||||    
T  23395001 ctaatctattctcatcgtttttaaatttgatatctaatattaaatgaagaaccgaaaagtgaagtt 23395066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 6847828 - 6847746
Alignment:
Q  38 gtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatga 121  Q
    |||||| ||||| ||||| ||||||||||||||||| |||||||| ||  | ||||| | | ||||||||||||| ||||||||    
T  6847828 gtctttttatttaaatcttttgtctactatgatcataagtgagtagac-ctcctagttttgggattgttggaatagtctaatga 6847746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 14545537 - 14545590
Alignment:
Q  56 cttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttgga 109  Q
    ||||||||| |||| |||||||||||| |||| ||| |||| ||||||||||||    
T  14545537 cttgtctacgatgaacattagtgagtagacttctcttgtcttgtgattgttgga 14545590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 12685817 - 12685682
Alignment:
Q  46 attttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtct 145  Q
    |||||||||  |||||||| |||||| | | |||||| |||||   ||||| | |||||||||| ||||||||||||||||||||| |||||| ||||||    
T  12685817 attttaatcctttgtctacaatgatcgtgactgagtacacttt---agtcttgggattgttggactaatctaatgattgaatcatattcaacccaagtct 12685721  T
Q  146 aaaatctattttataagaatccatttcctaatctaatct 184  Q
    ||||||||||||||   ||| | ||| ||||||||||||    
T  12685720 aaaatctattttatttaaattctttttctaatctaatct 12685682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 26266452 - 26266657
Alignment:
Q  40 ctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacct 139  Q
    ||||||||||||||||||| |||| |||||  || ||| |||| ||||||||| | | | |||||||||| |||||||||||||||||| || | ||||     
T  26266452 ctttatattttaatctcttctctaatatgagaatgagtaagtagacttttctaatgttgagattgttggactaatctaatgattgaatcctatttaaccc 26266551  T
Q  140 aagtctaaaatctattttataagaatccatttcctaatctaatctcat-tgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagtt 238  Q
    |||| |  ||| || |||||   ||| | ||| ||||| |||||||||   |||||||  || |||| ||||||||||||||| ||||| ||||||||||    
T  26266552 aagtatggaatttactttatttaaattctttttctaatataatctcatcatttgttaaccttaataaaaaatatcaaatgaaggaccgaaaagtgaagtt 26266651  T
Q  239 agatat 244  Q
     |||||    
T  26266652 tgatat 26266657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 356928 - 356806
Alignment:
Q  7 agtcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctact------atgatcattagtgagtaaacttttctagtctagtg 100  Q
    |||||| ||| ||||||||||||| || || |||| ||||| |||||| |||||||| |      ||||||||| |||| |||||| || |||||| | |    
T  356928 agtcatttatctttatgtcttttatttccatgtctctatatattaatcccttgtctattatgatcatgatcattggtgaataaactcttttagtcttgag 356829  T
Q  101 attgttggaataatctaatgatt 123  Q
    ||||| |||||||||||||||||    
T  356828 attgtgggaataatctaatgatt 356806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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