View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0586_low_70 (Length: 258)
Name: NF0586_low_70
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 30723449 - 30723205
Alignment:
| Q |
1 |
tagtaagatgaagtactctattgacaaagtttataaagtaccgttttccacctgatttcttcttcttgtgtttaaagaacacacaatcatctaagttcac |
100 |
Q |
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| T |
30723449 |
tagtaagatgaagtgctctattgacaaagtttataaagtaccgttttccacctgatttcttcttcttgtgtttaaagaacatactatcatctaagttcac |
30723350 |
T |
|
| Q |
101 |
cttggtgacgaaagtccaacaatctatccatcgtttagataacacacttgtacgagcagcgtctttcgtagggacacaagacagaatgtgagttataagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30723349 |
cttggtgacgaaagtccaacaatctatccatcgtttagataacacacttgtacgagcagcgtctttcgtagggacacaagacagaatgtaagttataagt |
30723250 |
T |
|
| Q |
201 |
gaatcaggtagattgctgattatatcctcgtttgccttatgcttc |
245 |
Q |
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|
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| T |
30723249 |
gaatcaggtagattgctgattatatcctcgtttgccttatgcttc |
30723205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 30715748 - 30715529
Alignment:
| Q |
10 |
gaagtactctattgacaaagtttataaagtaccgttttccacctgatttcttctt-cttgtgtttaaa--gaacacacaatcatctaagttcaccttggt |
106 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||| || || |||||||| ||||||||||| || |||||| |
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| T |
30715748 |
gaagtgctctattgacaaagtttataaagtgttgttttccacctgattttttcttacttttgggagaatggaacacactatcatctaagtccaacttggt |
30715649 |
T |
|
| Q |
107 |
gacgaaagtccaacaatctatccatcgtttagataacacacttgtacgagcagcgtctttcgtagggacacaagacagaatgtgagttataagtgaatca |
206 |
Q |
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| T |
30715648 |
gattgatgtccagctttctgtccaacttcttgataacacactcgtacgagcagcatcttttgtcgggagaaatgagagaatgcgagatctaagtgaatag |
30715549 |
T |
|
| Q |
207 |
ggtagattgctgattatatc |
226 |
Q |
| |
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||||| |||||||||||||| |
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| T |
30715548 |
ggtagcttgctgattatatc |
30715529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 11360278 - 11360372
Alignment:
| Q |
135 |
ttagataacacacttgtacgagcagcgtctttcgtagggacacaagacagaatgtgagttataagtgaatcaggtagattgctgattatatcctc |
229 |
Q |
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|||||||| |||||||||||| | || ||||| ||||| | |||||| | |||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
11360278 |
ttagataagacacttgtacgaactgcatcttttgtaggaagacaagatataatgtgagttataagtgaatcaggtagattactgattaaatcctc |
11360372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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