View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0586_low_75 (Length: 251)

Name: NF0586_low_75
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0586_low_75
NF0586_low_75
[»] chr2 (8 HSPs)
chr2 (159-251)||(8451778-8451870)
chr2 (38-159)||(44928781-44928902)
chr2 (38-159)||(29221284-29221405)
chr2 (38-159)||(29334583-29334704)
chr2 (77-160)||(33867679-33867762)
chr2 (77-159)||(25424643-25424725)
chr2 (77-159)||(4480951-4481033)
chr2 (79-128)||(25667387-25667436)
[»] chr8 (2 HSPs)
chr8 (38-156)||(34776824-34776942)
chr8 (77-161)||(7579948-7580032)
[»] chr5 (6 HSPs)
chr5 (38-159)||(6092728-6092849)
chr5 (38-159)||(20674990-20675111)
chr5 (38-139)||(15023408-15023509)
chr5 (42-159)||(41692565-41692682)
chr5 (48-128)||(30711-30791)
chr5 (77-161)||(29455682-29455766)
[»] chr4 (8 HSPs)
chr4 (38-159)||(31487170-31487290)
chr4 (38-159)||(55760204-55760315)
chr4 (77-161)||(32655648-32655732)
chr4 (77-159)||(52180904-52180986)
chr4 (77-161)||(42053394-42053478)
chr4 (77-155)||(26340373-26340451)
chr4 (77-161)||(3387342-3387426)
chr4 (77-157)||(28234298-28234378)
[»] chr6 (2 HSPs)
chr6 (38-159)||(3516261-3516383)
chr6 (77-162)||(6799554-6799639)
[»] chr3 (4 HSPs)
chr3 (38-161)||(30424713-30424836)
chr3 (77-159)||(19618573-19618655)
chr3 (76-128)||(2013189-2013241)
chr3 (87-159)||(5908119-5908191)
[»] chr1 (6 HSPs)
chr1 (38-160)||(14589911-14590033)
chr1 (34-158)||(14106213-14106337)
chr1 (76-107)||(4052498-4052529)
chr1 (77-159)||(25815460-25815542)
chr1 (42-107)||(39026685-39026750)
chr1 (103-159)||(6463310-6463366)
[»] chr7 (4 HSPs)
chr7 (90-158)||(11211325-11211393)
chr7 (77-160)||(16567465-16567548)
chr7 (77-160)||(16598114-16598197)
chr7 (77-159)||(46181112-46181194)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 8451778 - 8451870
Alignment:
Q  159 actcacatgtaagaattttatttgattttgactcaagtcaaatgtaagactaaagtatcacttttcaatagttgttttttctcttattaggac 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8451778 actcacatgtaagaattttatttgattttgactcaagtcaaatgtaagactaaagtatcacttttcaatagttgttttttctcttattaggac 8451870  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 44928781 - 44928902
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccat 137  Q
    |||||| |||||||||||||||||||||   ||||  ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  |||| ||    
T  44928781 ggacggacagtaaaattgttgcccacgagggtatgggttcgggtacggacattttttacaaacgcgggtacggggaaggacattatagtaccctgcctat 44928880  T
Q  138 tgggggcctattgccatcccta 159  Q
    ||||| || |||| ||||||||    
T  44928881 tggggacccattgtcatcccta 44928902  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 29221284 - 29221405
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccat 137  Q
    |||||||||||||||||||||||||||    ||||  ||||||||||| ||||||||||||| ||||||| | | |||| |||||||||||  || ||||    
T  29221284 ggacgggcagtaaaattgttgcccacgggggtatgggttcgggtacgggcattttttacaaatgcgggtatgggaacgggcattatagtaccctgtccat 29221383  T
Q  138 tgggggcctattgccatcccta 159  Q
    |||||||| |||||||||||||    
T  29221384 tgggggcccattgccatcccta 29221405  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 29334583 - 29334704
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccat 137  Q
    |||||||||||||||||||||||||||    ||||  ||||||||||| ||||||||||||| ||||||| | | |||| |||||||||||  || ||||    
T  29334583 ggacgggcagtaaaattgttgcccacgggggtatgggttcgggtacgggcattttttacaaatgcgggtatgggaacgggcattatagtaccctgtccat 29334682  T
Q  138 tgggggcctattgccatcccta 159  Q
    |||||||| |||||||||||||    
T  29334683 tgggggcccattgccatcccta 29334704  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 33867679 - 33867762
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatccctac 160  Q
    |||||||||| |||||||| ||| ||||||| | ||||||||||| ||||||  | |||||||||  || ||||||||||||||    
T  33867679 cgggtacggatattttttataaatgcgggtatggggacggacattgtagtaccctacccattgggtacccattgccatccctac 33867762  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 25424725 - 25424643
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatcccta 159  Q
    |||||||||| |||||||| ||| ||||||| | ||||||||||| ||||||  | |||||||||  || |||||||||||||    
T  25424725 cgggtacggatattttttataaatgcgggtatggggacggacattgtagtaccctacccattgggtacccattgccatcccta 25424643  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 4481033 - 4480951
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatcccta 159  Q
    |||||||||  |||||||| ||| ||||||| | |||||| |||| |||||| || |||||||||  || |||||||||||||    
T  4481033 cgggtacgggtattttttataaatgcgggtatggggacgggcattgtagtaccttacccattgggtacccattgccatcccta 4480951  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 25667436 - 25667387
Alignment:
Q  79 ggtacggacattttttacaaacgcgggtacgaggacggacattatagtac 128  Q
    |||||||| |||||||||||||||||||||| ||| ||  ||||||||||    
T  25667436 ggtacggatattttttacaaacgcgggtacggggaagggtattatagtac 25667387  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 34776824 - 34776942
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccat 137  Q
    |||||||||||||||||||||||||| |   ||||  ||||||||||| |||||||||||||||||||||   |||||| |||||||||||  |||||||    
T  34776824 ggacgggcagtaaaattgttgcccacaagggtatgggttcgggtacgggcattttttacaaacgcgggtatcgggacgggcattatagtaccctgcccat 34776923  T
Q  138 tgggggcctattgccatcc 156  Q
    |||| ||| ||||||||||    
T  34776924 tgggagcccattgccatcc 34776942  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 7580032 - 7579948
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatccctact 161  Q
    ||||||||| |||||||||||||| |||||| | ||| ||  | ||||||||  | ||||||||| ||| |||||||||||||||    
T  7580032 cgggtacggccattttttacaaacacgggtatggggatgggtactatagtaccctacccattgggtgcccattgccatccctact 7579948  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 6092849 - 6092728
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccat 137  Q
    ||||||||||||||||||||||||||||   ||||  |||  |||||| |||||||||||||||||||||   |||||| |||||||||||  |||||||    
T  6092849 ggacgggcagtaaaattgttgcccacgagggtatgggttcaagtacgggcattttttacaaacgcgggtatcgggacgggcattatagtaccctgcccat 6092750  T
Q  138 tgggggcctattgccatcccta 159  Q
    |||||| | |||||||||||||    
T  6092749 tggggggccattgccatcccta 6092728  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 20674990 - 20675111
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccat 137  Q
    ||||||||| ||||||||||||||| ||   ||||  || |||||||| ||||||||||||||||||||||  |||| | |||||||||||  |||||||    
T  20674990 ggacgggcattaaaattgttgcccatgagggtatgggtttgggtacgggcattttttacaaacgcgggtacagggacaggcattatagtaccctgcccat 20675089  T
Q  138 tgggggcctattgccatcccta 159  Q
    |||||||| |||||||||||||    
T  20675090 tgggggcccattgccatcccta 20675111  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 15023408 - 15023509
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccat 137  Q
    ||||||||||||||||||||||||||||   ||||  ||||||||| |||||||||||||||||| |||| | |||||| |||||||||||  |||||||    
T  15023408 ggacgggcagtaaaattgttgcccacgagggtatgggttcgggtactgacattttttacaaacgccggtatggggacgggcattatagtaccctgcccat 15023507  T
Q  138 tg 139  Q
    ||    
T  15023508 tg 15023509  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 41692565 - 41692682
Alignment:
Q  42 gggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattggg 141  Q
    ||||| |||| |||||||||||||   || |  ||||||||||||||||||||||||| | ||||| | ||| ||| | ||||||||  |  ||||||||    
T  41692565 gggcattaaagttgttgcccacgagggtacgggttcgggtacggacattttttacaaatgagggtatggggatggatactatagtaccctatccattggg 41692664  T
Q  142 ggcctattgccatcccta 159  Q
      || |||||||||||||    
T  41692665 tacccattgccatcccta 41692682  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 30791 - 30711
Alignment:
Q  48 taaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtac 128  Q
    |||| ||||||||||| || |||||||||||| |||| | |||||||||||| || ||||   ||| ||||||| ||||||    
T  30791 taaagttgttgcccacaaagatatgaattcggatacgaatattttttacaaatgcaggtatagggaaggacattgtagtac 30711  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 29455766 - 29455682
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatccctact 161  Q
    |||||||||  | |||||| ||| ||||||| | ||| ||||||||||||||  | ||||||||  ||| |||||||||||||||    
T  29455766 cgggtacgggtaatttttaaaaatgcgggtatggggatggacattatagtaccctacccattggatgcccattgccatccctact 29455682  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 31487290 - 31487170
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccat 137  Q
    |||||| |||||||||||||||||||||   ||||  ||||| |||||  ||||||||||||| |||||| |||||||| |||||||||||  |||||||    
T  31487290 ggacggacagtaaaattgttgcccacgagggtatgggttcggatacgggtattttttacaaacacgggtatgaggacgggcattatagtac-ctgcccat 31487192  T
Q  138 tgggggcctattgccatcccta 159  Q
    |||||||| |||||||||||||    
T  31487191 tgggggccgattgccatcccta 31487170  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 55760315 - 55760204
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccat 137  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||          |||| |||||||||||  || ||||    
T  55760315 ggacgggcagtaaaattgttgcccacgaagatatgggttcgggtacggacattttttacaaacgc----------acgggcattatagtaccctgtccat 55760226  T
Q  138 tgggggcctattgccatcccta 159  Q
    |||||||| |||||||||||||    
T  55760225 tgggggcccattgccatcccta 55760204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 32655648 - 32655732
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatccctact 161  Q
    |||||||||| |||||||| ||| ||||||| | ||||||||||| ||||||  | |||||||||  || |||||||||||||||    
T  32655648 cgggtacggatattttttataaatgcgggtatggggacggacattgtagtaccctacccattgggtacccattgccatccctact 32655732  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 52180904 - 52180986
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatcccta 159  Q
    |||||||||| |||||||| ||| ||||||| | ||||||||||| ||||||  | |||||||||  || |||||||||||||    
T  52180904 cgggtacggatattttttataaatgcgggtatggggacggacattgtagtaccctacccattgggtacccattgccatcccta 52180986  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 42053394 - 42053478
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatccctact 161  Q
    |||||||||| |||||||| ||| ||||||| | |||||| |||| ||||||  | |||||||||  || |||||||||||||||    
T  42053394 cgggtacggatattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatccctact 42053478  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 26340373 - 26340451
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatc 155  Q
    ||||||| ||||||||||||||||||||||| | ||| ||| | ||||||||  | |||||||||  || |||||||||    
T  26340373 cgggtacagacattttttacaaacgcgggtatggggatggatactatagtaccctacccattgggtacccattgccatc 26340451  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 3387342 - 3387426
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatccctact 161  Q
    |||||||||  |||||||| ||| ||||||| | |||||| |||| ||||||  | |||||||||  || |||||||||||||||    
T  3387342 cgggtacgggtattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatccctact 3387426  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 28234298 - 28234378
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatccc 157  Q
    ||||||||||||||||||||||| ||||||| | ||| ||| | ||||||||  |  ||||||||  || |||||||||||    
T  28234298 cgggtacggacattttttacaaatgcgggtatggggatggatactatagtaccctatccattgggtacccattgccatccc 28234378  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 3516261 - 3516383
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtac-gaggacggacattatagtacattgccca 136  Q
    ||||||||||||||||||||||||| |||  ||||  ||||||||||| |||||||||||||||| ||||| | |||| | ||||| |||||  ||||||    
T  3516261 ggacgggcagtaaaattgttgcccatgaaggtatgggttcgggtacgggcattttttacaaacgcaggtacgggggacaggcattacagtaccctgccca 3516360  T
Q  137 ttgggggcctattgccatcccta 159  Q
    ||| ||||| |||||||||||||    
T  3516361 ttgagggcccattgccatcccta 3516383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 6799554 - 6799639
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatccctactc 162  Q
    ||||||||| ||||||||||||||||||||| | ||| ||| | |||||||| || |||||||||  || ||||||||||||||||    
T  6799554 cgggtacgggcattttttacaaacgcgggtatggggatggatactatagtaccttacccattgggtacccattgccatccctactc 6799639  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 30424836 - 30424713
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccat 137  Q
    |||||| ||||||||||||||||||| |  |||||  ||| |||| |  ||||||||||||||||| ||| | |||| | |||||||||||  || ||||    
T  30424836 ggacggacagtaaaattgttgcccacaaggatatgggttcaggtatgagcattttttacaaacgcgagtatggggacaggcattatagtaccctgtccat 30424737  T
Q  138 tgggggcctattgccatccctact 161  Q
    || ||||| |||||||||||||||    
T  30424736 tgagggcccattgccatccctact 30424713  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 19618655 - 19618573
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatcccta 159  Q
    |||||||||| |||||||| ||| ||||||| | ||||||||| | ||||||  ||||||||||   || |||||||||||||    
T  19618655 cgggtacggatattttttataaatgcgggtatggggacggacaatgtagtaccctgcccattggatacccattgccatcccta 19618573  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 2013189 - 2013241
Alignment:
Q  76 tcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtac 128  Q
    |||||||| ||||||| ||||||||||||||| ||||| ||  ||||||||||    
T  2013189 tcgggtacagacatttcttacaaacgcgggtatgaggaagggtattatagtac 2013241  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 5908191 - 5908119
Alignment:
Q  87 cattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatcccta 159  Q
    ||||||||||||||||||||| | ||| ||| | ||||||||  | |||||||||  || |||||||||||||    
T  5908191 cattttttacaaacgcgggtatggggatggatactatagtaccctacccattgggtacccattgccatcccta 5908119  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 14589911 - 14590033
Alignment:
Q  38 ggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccat 137  Q
    ||||||| ||||||||||||||||||||   ||||| |||||||||    ||||||||||||  |||||| | ||||   |||||||||||  |||||||    
T  14589911 ggacgggtagtaaaattgttgcccacgagggtatgagttcgggtacatgtattttttacaaatacgggtatggggacaagcattatagtaccctgcccat 14590010  T
Q  138 tgggggcctattgccatccctac 160  Q
    ||||| |  ||||||||||||||    
T  14590011 tggggacgcattgccatccctac 14590033  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 14106337 - 14106213
Alignment:
Q  34 atgaggacgggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgc 133  Q
    ||||||| ||| | |||| |||||||||||||  |||  |  |||||||||||||||||||||||||| |||||   ||| ||| | ||||||||  |||    
T  14106337 atgaggaagggtactaaagttgttgcccacgaggatacaagctcgggtacggacattttttacaaacgtgggtatagggatggatactatagtaccctgc 14106238  T
Q  134 ccattgggggcctattgccatccct 158  Q
    ||||||||  || ||||||||||||    
T  14106237 ccattgggtaccaattgccatccct 14106213  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 4052498 - 4052529
Alignment:
Q  76 tcgggtacggacattttttacaaacgcgggta 107  Q
    ||||||||||||||||||||||||||||||||    
T  4052498 tcgggtacggacattttttacaaacgcgggta 4052529  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 25815460 - 25815542
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatcccta 159  Q
    |||||||||| |||||||| ||| ||||||| | |||||| |||| ||||||  | |||||||||  || |||||||||||||    
T  25815460 cgggtacggatattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatcccta 25815542  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 39026750 - 39026685
Alignment:
Q  42 gggcagtaaaattgttgcccacgaaaatatgaattcgggtacggacattttttacaaacgcgggta 107  Q
    ||||| |||| ||||||||||||| | || | | |||||||||| ||||||||||||||| |||||    
T  39026750 gggcactaaagttgttgcccacgagagtacggactcgggtacgggcattttttacaaacgtgggta 39026685  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 6463366 - 6463310
Alignment:
Q  103 gggtacgaggacggacattatagtacattgcccattgggggcctattgccatcccta 159  Q
    ||||||| |||||  |||||||||||  |||||||||||||||  ||||||||||||    
T  6463366 gggtacggggacgagcattatagtaccctgcccattgggggcccgttgccatcccta 6463310  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 11211325 - 11211393
Alignment:
Q  90 tttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatccct 158  Q
    |||||||||||||||||| | |||| | |||||||||||  | ||||||||||| | ||||||||||||    
T  11211325 tttttacaaacgcgggtatggggacaggcattatagtaccctacccattgggggtccattgccatccct 11211393  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 16567548 - 16567465
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatccctac 160  Q
    |||||||||| |||||||| ||| ||||||| | |||||| |||| ||||||  | |||||||||  || ||||||||||||||    
T  16567548 cgggtacggatattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatccctac 16567465  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 16598114 - 16598197
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatccctac 160  Q
    |||||||||| |||||||| ||| ||||||| | |||||| |||| ||||||  | |||||||||  || ||||||||||||||    
T  16598114 cgggtacggatattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatccctac 16598197  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 46181194 - 46181112
Alignment:
Q  77 cgggtacggacattttttacaaacgcgggtacgaggacggacattatagtacattgcccattgggggcctattgccatcccta 159  Q
    |||||||||| |||||||| ||| ||||||| | |||||| |||| ||||||  | |||||||||  || |||||||||||||    
T  46181194 cgggtacggatattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatcccta 46181112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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