View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0586_low_77 (Length: 251)
Name: NF0586_low_77
Description: NF0586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0586_low_77 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 47562907 - 47562992
Alignment:
| Q |
1 |
agattttataatgcctcatggtgtgagttaccaaataagaaccctattgtaaatttatgcaagatttaaagaaatggatacaatgt |
86 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47562907 |
agattttgtaatgcctcgtggtgtgagttaccaaataagaaccctattgtaaatttatgcaaaatttaaagaaatggatacaatgt |
47562992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 47563064 - 47563126
Alignment:
| Q |
160 |
aagaacaagattataacatggtttttcatacatataaaaatctagaaaggaggatgaggagga |
222 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47563064 |
aagaataagattataacatggtttttcatatatataaaaatctagaaaggaggatgaggagga |
47563126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1406 times since January 2019
Visitors: 3846