View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0587_high_15 (Length: 251)
Name: NF0587_high_15
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0587_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 16789939 - 16789695
Alignment:
| Q |
1 |
ttattttgtaggtggtacctagttgaatataattatgagacaagctttcattacttcagataattttttaatcaactatttcatttatttaattggtttc |
100 |
Q |
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| T |
16789939 |
ttattttgtaggtggtacctagttgaatataattatgagacaagctt-cattacttcagataattttttaatcaactatttcatttatctaattggtttc |
16789841 |
T |
|
| Q |
101 |
atgatttcactttaaatattgcattctgtacatttttgctaatatttatttgaacatggctatgttccttcgaaggataattta---attggaatccata |
197 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
16789840 |
atgatttctctttaaatattgcattctgtacatttttgctaatacttatttgaacatggctatattccttcgaaggataatttaattattggaatccata |
16789741 |
T |
|
| Q |
198 |
cactaagtatttgagagtttaggtaattattttttcgattcatctc |
243 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16789740 |
cactccgtatttgagagtttaggtaattattttttcgattcatctc |
16789695 |
T |
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