View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0587_low_1 (Length: 978)

Name: NF0587_low_1
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0587_low_1
NF0587_low_1
[»] chr6 (13 HSPs)
chr6 (342-864)||(28154464-28154988)
chr6 (1-129)||(28154339-28154467)
chr6 (131-359)||(28246027-28246255)
chr6 (131-359)||(28328269-28328497)
chr6 (131-359)||(28505905-28506133)
chr6 (133-359)||(28239048-28239274)
chr6 (131-359)||(28524905-28525133)
chr6 (197-359)||(28191138-28191300)
chr6 (315-385)||(28192456-28192525)
chr6 (176-335)||(28142352-28142511)
chr6 (805-864)||(28179496-28179555)
chr6 (171-242)||(28095794-28095865)
chr6 (791-864)||(28143032-28143105)
[»] scaffold0038 (2 HSPs)
scaffold0038 (131-359)||(46189-46417)
scaffold0038 (133-359)||(39210-39436)
[»] scaffold0019 (1 HSPs)
scaffold0019 (149-359)||(55513-55723)
[»] chr5 (1 HSPs)
chr5 (191-335)||(16693892-16694036)
[»] chr4 (1 HSPs)
chr4 (211-342)||(5088325-5088456)
[»] chr2 (1 HSPs)
chr2 (171-242)||(3282422-3282493)
[»] chr8 (1 HSPs)
chr8 (179-254)||(16352164-16352239)


Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 342 - 864
Target Start/End: Original strand, 28154464 - 28154988
Alignment:
Q  342 caaatcattgacttcctctttgcaggagaatgctactaaataagnnnnnnnnnncttgcttaaaaatttcattttacatttcatagcatattgtaattta 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||||||||||||||||    
T  28154464 caaatcattgacttcctctttgcaggagaatgctactaaataagtttttattttcatgcttaaaaatttcattttacatttcatagcatattgtaattta 28154563  T
Q  442 tgttggtaatcttataaattatttatgactaacaggagctgcatatatctggaaatacgaacattcgtatggcaggatctgcaaggattctggagtggtt 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154564 tgttggtaatcttataaattatttatgactaacaggagctgcatatatctggaaatacgaacattcgtatggcaggatctgcaaggattctggagtggtt 28154663  T
Q  542 tgagcaccaaagcacgggacaatgaatttaattctggtactccctcagtgaatttcattcattaagacccaatctgttcatcaaagactatgactgtcaa 641  Q
    ||||||||||            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154664 tgagcaccaa------------tgtatttaattctggtactccctcagtgaatttcattcattaagacccaatctgttcatcaaagactatgactgtcaa 28154751  T
Q  642 agtggtcttggacatggta--------------gaaccgaataatacatatctatacgatcttcaactagaggatatgcggttcaattctatactgcaca 727  Q
    |||||||||||||||||||              |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28154752 agtggtcttggacatggtagtaatatcggggtagaaccgaataatacgtatctatacgatcttcaactggaggatatgcggttcaattctatactgcaca 28154851  T
Q  728 atgcacttctgaaaaatgaatggatccatgtagagattacatgcaggtcttagatgataacaacactctttacagattttggaatccatgtatcaaagca 827  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  28154852 atgcacttctgaaaaatgaatggatccatgtagagattacatgcaggtctttgatgatgacaacactcgttacagattttggaatccatgtattaaagca 28154951  T
Q  828 gaaaagtagcatggcggatattcaattcactgatcct 864  Q
    |||||||||||||||||||||||||||||| ||||||    
T  28154952 gaaaagtagcatggcggatattcaattcaccgatcct 28154988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 28154339 - 28154467
Alignment:
Q  1 ttgtctagtagtattatcatgatgccaaaattgtcatggattactattgagggcggtctattattgccaaaccaaaatgttaagctgaattccatcctgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28154339 ttgtctagtagtattatcatgatgccaaaattgtcatggattactattgagggcggtctattattgccaaaccaaaatgttaagctgaattccatcctga 28154438  T
Q  101 ctacaaatgtacgacaacttctgctcaaa 129  Q
    ||||||||||||||||||||| |||||||    
T  28154439 ctacaaatgtacgacaacttcggctcaaa 28154467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 131 - 359
Target Start/End: Original strand, 28246027 - 28246255
Alignment:
Q  131 aatgcagcttgtcataagaatttcttgcaatgcttctcatgtggtttactaatgtggaatatttaaacctatcaaggagtaatttcactattcttccaga 230  Q
    |||||| ||||||| | ||||||||| ||||  || ||||||||| | | ||||| |||| |||||||||||||   |  |||||||| |||||||||||    
T  28246027 aatgcaacttgtcagatgaatttcttccaatagttgtcatgtggtctgcgaatgtagaatttttaaacctatcagaaaacaatttcacaattcttccaga 28246126  T
Q  231 atgcatcaaagactgtcactttttatggcggcttcatttggatgagtgcaaatgtcttcgagaaattagaggggttccaccaaatttaaaacatttgtct 330  Q
    |||||||||||| |||| ||||||||||   |||   |||||||| ||||| || ||| |||||||||||||| ||||||||||||||||||| ||||||    
T  28246127 atgcatcaaagattgtcgctttttatggtctcttaggttggatgattgcaagtgccttagagaaattagagggattccaccaaatttaaaacacttgtct 28246226  T
Q  331 gcattaggctgcaaatcattgacttcctc 359  Q
    ||| || ||||||||||||||||||||||    
T  28246227 gcaatacgctgcaaatcattgacttcctc 28246255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 131 - 359
Target Start/End: Original strand, 28328269 - 28328497
Alignment:
Q  131 aatgcagcttgtcataagaatttcttgcaatgcttctcatgtggtttactaatgtggaatatttaaacctatcaaggagtaatttcactattcttccaga 230  Q
    |||||| ||||||| | ||||||||| |||| ||| ||||||||| | |||||||||||   ||| |||||||| | | || |||||| |||||||||||    
T  28328269 aatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattcttccaga 28328368  T
Q  231 atgcatcaaagactgtcactttttatggcggcttcatttggatgagtgcaaatgtcttcgagaaattagaggggttccaccaaatttaaaacatttgtct 330  Q
    |||||||||||| |||| |||||| | |  ||||   |||||||| ||||| || |||||||||||||||||| ||||||||||||||||| ||||||||    
T  28328369 atgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtct 28328468  T
Q  331 gcattaggctgcaaatcattgacttcctc 359  Q
    |||  | ||||||||||||||||||||||    
T  28328469 gcaaaatgctgcaaatcattgacttcctc 28328497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 131 - 359
Target Start/End: Original strand, 28505905 - 28506133
Alignment:
Q  131 aatgcagcttgtcataagaatttcttgcaatgcttctcatgtggtttactaatgtggaatatttaaacctatcaaggagtaatttcactattcttccaga 230  Q
    |||||| ||||||| | ||||||||| |||| ||| ||||||||| | |||||||||||   ||| |||||||| | | || |||||| |||||||||||    
T  28505905 aatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattcttccaga 28506004  T
Q  231 atgcatcaaagactgtcactttttatggcggcttcatttggatgagtgcaaatgtcttcgagaaattagaggggttccaccaaatttaaaacatttgtct 330  Q
    |||||||||||| |||| |||||| | |  ||||   |||||||| ||||| || |||||||||||||||||| ||||||||||||||||| ||||||||    
T  28506005 atgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtct 28506104  T
Q  331 gcattaggctgcaaatcattgacttcctc 359  Q
    |||  | ||||||||||||||||||||||    
T  28506105 gcaaaatgctgcaaatcattgacttcctc 28506133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 133 - 359
Target Start/End: Original strand, 28239048 - 28239274
Alignment:
Q  133 tgcagcttgtcataagaatttcttgcaatgcttctcatgtggtttactaatgtggaatatttaaacctatcaaggagtaatttcactattcttccagaat 232  Q
    |||| ||||||| | ||||||||| ||||  || ||||||||| | ||||||||  | | ||| |||||||| | | ||||||||| |||||||||||||    
T  28239048 tgcatcttgtcagatgaatttcttccaataattgtcatgtggtctgctaatgtgtcaaagttagacctatcaggaaataatttcacaattcttccagaat 28239147  T
Q  233 gcatcaaagactgtcactttttatggcggcttcatttggatgagtgcaaatgtcttcgagaaattagaggggttccaccaaatttaaaacatttgtctgc 332  Q
    |||||||||| |||| |||||||  |   |||   |||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  28239148 gcatcaaagattgtcgctttttaacggatcttatattggatgattgcaaatgccttagagaaattagagggattccaccaaatttaaaacacttgtctgc 28239247  T
Q  333 attaggctgcaaatcattgacttcctc 359  Q
    |  |  |||||||||||||| ||||||    
T  28239248 aaaatactgcaaatcattgatttcctc 28239274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 131 - 359
Target Start/End: Original strand, 28524905 - 28525133
Alignment:
Q  131 aatgcagcttgtcataagaatttcttgcaatgcttctcatgtggtttactaatgtggaatatttaaacctatcaaggagtaatttcactattcttccaga 230  Q
    |||||| ||||||| | || |||||| |||| ||| ||||||||| | |||||||| ||   ||| |||||||| | | ||||||||| |||||||||||    
T  28524905 aatgcaacttgtcagatgattttcttccaatacttgtcatgtggtctgctaatgtgaaaatattagacctatcaggaaataatttcacaattcttccaga 28525004  T
Q  231 atgcatcaaagactgtcactttttatggcggcttcatttggatgagtgcaaatgtcttcgagaaattagaggggttccaccaaatttaaaacatttgtct 330  Q
    |||||||||||| | ||| |||||||     |||   |||||||| ||||| || ||| |||||||||||||| | || |||||||||  | | ||||||    
T  28525005 atgcatcaaagattttcagtttttatatgctcttatattggatgattgcaagtgccttagagaaattagagggatgccgccaaatttagcatacttgtct 28525104  T
Q  331 gcattaggctgcaaatcattgacttcctc 359  Q
    ||| ||||||||||||| |||||||||||    
T  28525105 gcaataggctgcaaatccttgacttcctc 28525133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 197 - 359
Target Start/End: Original strand, 28191138 - 28191300
Alignment:
Q  197 acctatcaaggagtaatttcactattcttccagaatgcatcaaagactgtcactttttatggcggcttcatttggatgagtgcaaatgtcttcgagaaat 296  Q
    |||||||| | | ||||||||| ||||||||||||||||||||||| |||||| |||||| |   |||   |||||||| ||||| || ||| |||||||    
T  28191138 acctatcaggaaataatttcacaattcttccagaatgcatcaaagattgtcaccttttatcggatcttatattggatgattgcaagtgccttagagaaat 28191237  T
Q  297 tagaggggttccaccaaatttaaaacatttgtctgcattaggctgcaaatcattgacttcctc 359  Q
    ||||||| |||||| |||||||| | | |||||||||  |  |||||||||||||||||||||    
T  28191238 tagagggattccactaaatttaacaaacttgtctgcagcaaactgcaaatcattgacttcctc 28191300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 28192525 - 28192456
Alignment:
Q  315 tttaaaacatttgtctgcattaggctgcaaatcattgacttcctctttgcaggagaatgctactaaataag 385  Q
    ||||||||||||||||||||||   |||||||||||||||||||| ||||||||| |||||||||||||||    
T  28192525 tttaaaacatttgtctgcattaaattgcaaatcattgacttcctc-ttgcaggagcatgctactaaataag 28192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 335
Target Start/End: Original strand, 28142352 - 28142511
Alignment:
Q  176 ttactaatgtggaatatttaaacctatcaaggagtaatttcactattcttccagaatgcatcaaagactgtcactttttatggcggcttcatttggatga 275  Q
    ||||||||||| || |||||  ||||||| |||||||||| || || ||||| |||||| ||||||| ||  ||||||||  | | ||| | |||||| |    
T  28142352 ttactaatgtgaaagatttagtcctatcagggagtaattttacaatccttccggaatgcctcaaagaatgcaactttttacagagccttgaattggataa 28142451  T
Q  276 gtgcaaatgtcttcgagaaattagaggggttccaccaaatttaaaacatttgtctgcatt 335  Q
     || || | ||||| ||||||||| ||| |||| ||||||||||||||| ||||||||||    
T  28142452 ttgtaagtctcttcaagaaattagggggattccgccaaatttaaaacatgtgtctgcatt 28142511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 805 - 864
Target Start/End: Original strand, 28179496 - 28179555
Alignment:
Q  805 tttggaatccatgtatcaaagcagaaaagtagcatggcggatattcaattcactgatcct 864  Q
    |||||||||||||||| ||||| | ||||||||||| |||||||||||||||| ||||||    
T  28179496 tttggaatccatgtattaaagccgtaaagtagcatgacggatattcaattcaccgatcct 28179555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 28095865 - 28095794
Alignment:
Q  171 gtggtttactaatgtggaatatttaaacctatcaaggagtaatttcactattcttccagaatgcatcaaaga 242  Q
    ||||||| ||||||||  | |||||||| ||||||  |||||| |||| |||||||| ||||||||||||||    
T  28095865 gtggtttgctaatgtgacaaatttaaacttatcaaaaagtaatatcacaattcttccggaatgcatcaaaga 28095794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 864
Target Start/End: Original strand, 28143032 - 28143105
Alignment:
Q  791 cactctttacagattttggaatccatgtatcaaagcagaaaagtagcatggcggatattcaattcactgatcct 864  Q
    ||||| ||||| ||| |||||| |||||||  ||||||||||| ||||||   ||||||| |||||||||||||    
T  28143032 cactccttacaaattgtggaattcatgtattcaagcagaaaagcagcatgaatgatattcgattcactgatcct 28143105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 93; Significance: 9e-45; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 131 - 359
Target Start/End: Original strand, 46189 - 46417
Alignment:
Q  131 aatgcagcttgtcataagaatttcttgcaatgcttctcatgtggtttactaatgtggaatatttaaacctatcaaggagtaatttcactattcttccaga 230  Q
    |||||| ||||||| | ||||||||| ||||  || ||||||||| | | ||||| |||| |||||||||||||   |  |||||||| |||||||||||    
T  46189 aatgcaacttgtcagatgaatttcttccaatagttgtcatgtggtctgcgaatgtagaatttttaaacctatcagaaaacaatttcacaattcttccaga 46288  T
Q  231 atgcatcaaagactgtcactttttatggcggcttcatttggatgagtgcaaatgtcttcgagaaattagaggggttccaccaaatttaaaacatttgtct 330  Q
    |||||||||||| |||| ||||||||||   |||   |||||||| ||||| || ||| |||||||||||||| ||||||||||||||||||| ||||||    
T  46289 atgcatcaaagattgtcgctttttatggtctcttaggttggatgattgcaagtgccttagagaaattagagggattccaccaaatttaaaacacttgtct 46388  T
Q  331 gcattaggctgcaaatcattgacttcctc 359  Q
    ||| || ||||||||||||||||||||||    
T  46389 gcaatacgctgcaaatcattgacttcctc 46417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 133 - 359
Target Start/End: Original strand, 39210 - 39436
Alignment:
Q  133 tgcagcttgtcataagaatttcttgcaatgcttctcatgtggtttactaatgtggaatatttaaacctatcaaggagtaatttcactattcttccagaat 232  Q
    |||| ||||||| | ||||||||| ||||  || ||||||||| | ||||||||  | | ||| |||||||| | | ||||||||| |||||||||||||    
T  39210 tgcatcttgtcagatgaatttcttccaataattgtcatgtggtctgctaatgtgtcaaagttagacctatcaggaaataatttcacaattcttccagaat 39309  T
Q  233 gcatcaaagactgtcactttttatggcggcttcatttggatgagtgcaaatgtcttcgagaaattagaggggttccaccaaatttaaaacatttgtctgc 332  Q
    |||||||||| |||| |||||||  |   |||   |||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  39310 gcatcaaagattgtcgctttttaacggatcttatattggatgattgcaaatgccttagagaaattagagggattccaccaaatttaaaacacttgtctgc 39409  T
Q  333 attaggctgcaaatcattgacttcctc 359  Q
    |  |  |||||||||||||| ||||||    
T  39410 aaaatactgcaaatcattgatttcctc 39436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 149 - 359
Target Start/End: Complemental strand, 55723 - 55513
Alignment:
Q  149 aatttcttgcaatgcttctcatgtggtttactaatgtggaatatttaaacctatcaaggagtaatttcactattcttccagaatgcatcaaagactgtca 248  Q
    |||||||| |||| ||| ||||||||| | |||||||| ||  |||| |||||||| | | ||||||||| |||||||| |||||||| ||||| ||||     
T  55723 aatttcttccaatacttgtcatgtggtctgctaatgtgaaaactttagacctatcaggaaataatttcacaattcttccggaatgcatgaaagattgtcg 55624  T
Q  249 ctttttatggcggcttcatttggatgagtgcaaatgtcttcgagaaattagaggggttccaccaaatttaaaacatttgtctgcattaggctgcaaatca 348  Q
    |||||| |||   ||| | |||||||| ||||| || |||||||||||||||||| ||||||||||| ||||||| ||||||||| || |||||||||||    
T  55623 ctttttgtggtttcttaaattggatgattgcaagtgccttcgagaaattagagggattccaccaaatgtaaaacacttgtctgcaatacgctgcaaatca 55524  T
Q  349 ttgacttcctc 359  Q
    |||||||||||    
T  55523 ttgacttcctc 55513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 191 - 335
Target Start/End: Original strand, 16693892 - 16694036
Alignment:
Q  191 atttaaacctatcaaggagtaatttcactattcttccagaatgcatcaaagactgtcacttttt-atggcggcttcatttggatgagtgcaaatgtcttc 289  Q
    ||||| ||||||| |||| || |||||| || ||||||||||  |||||||| || |||||||| ||  || ||| ||||| |||| |||| ||||||||    
T  16693892 atttagacctatcgaggaatagtttcacaatacttccagaatttatcaaagaatgccactttttgattacg-cttaatttgaatgactgcacatgtcttc 16693990  T
Q  290 gagaaattagaggggttccaccaaatttaaaacatttgtctgcatt 335  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||    
T  16693991 gagaaattagagggattcctccaaatttaaaacgtttgtctgcatt 16694036  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 342
Target Start/End: Complemental strand, 5088456 - 5088325
Alignment:
Q  211 aatttcactattcttccagaatgcatcaaagactgtcactttttatggcggcttcatttggatgagtgcaaatgtcttcgagaaattagaggggttccac 310  Q
    |||||||  ||||||||||||||| ||||||| |||| |||| ||||| | ||||| ||| |||| ||||| | ||||| ||||||||||||| |||| |    
T  5088456 aatttcaaaattcttccagaatgcctcaaagaatgtcgctttctatggagccttcaattgaatgaatgcaagtctcttcaagaaattagagggattcctc 5088357  T
Q  311 caaatttaaaacatttgtctgcattaggctgc 342  Q
    ||| | ||||  |  ||||||||||| |||||    
T  5088356 caactctaaagaacatgtctgcattacgctgc 5088325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 3282422 - 3282493
Alignment:
Q  171 gtggtttactaatgtggaatatttaaacctatcaaggagtaatttcactattcttccagaatgcatcaaaga 242  Q
    ||||||||||||||||  ||||||| || |||||| || ||||||||| |||||||||||||||||| ||||    
T  3282422 gtggtttactaatgtgacatatttacacttatcaaagaataatttcacaattcttccagaatgcatcgaaga 3282493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 16352239 - 16352164
Alignment:
Q  179 ctaatgtggaatatttaaacctatcaaggagtaatttcactattcttccagaatgcatcaaagactgtcacttttt 254  Q
    |||||||| || ||||||||||||| | || ||||||||| | |||||  | ||| ||||||||||||||||||||    
T  16352239 ctaatgtgaaagatttaaacctatcgaagaataatttcacaactcttcatgcatggatcaaagactgtcacttttt 16352164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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